Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.14■■□□□ 1.62
HMGB1P09429 IRS3P-201ENST00000223076 1006 ntBASIC25.14■■□□□ 1.62
HMGB1P09429 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.14■■□□□ 1.62
HMGB1P09429 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC25.14■■□□□ 1.62
HMGB1P09429 AC105265.2-201ENST00000467189 838 ntBASIC25.14■■□□□ 1.62
HMGB1P09429 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
HMGB1P09429 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.61
HMGB1P09429 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
HMGB1P09429 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.14■■□□□ 1.61
HMGB1P09429 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
HMGB1P09429 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC25.13■■□□□ 1.61
HMGB1P09429 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.13■■□□□ 1.61
HMGB1P09429 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC25.13■■□□□ 1.61
HMGB1P09429 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC25.13■■□□□ 1.61
HMGB1P09429 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
HMGB1P09429 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
HMGB1P09429 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
HMGB1P09429 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.12■■□□□ 1.61
HMGB1P09429 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC25.12■■□□□ 1.61
HMGB1P09429 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC25.12■■□□□ 1.61
HMGB1P09429 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
HMGB1P09429 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
HMGB1P09429 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.11■■□□□ 1.61
HMGB1P09429 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.11■■□□□ 1.61
HMGB1P09429 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.11■■□□□ 1.61
HMGB1P09429 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC25.11■■□□□ 1.61
HMGB1P09429 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
HMGB1P09429 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC25.11■■□□□ 1.61
HMGB1P09429 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
HMGB1P09429 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC25.1■■□□□ 1.61
HMGB1P09429 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.1■■□□□ 1.61
HMGB1P09429 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.1■■□□□ 1.61
HMGB1P09429 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC25.1■■□□□ 1.61
HMGB1P09429 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.1■■□□□ 1.61
HMGB1P09429 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HMGB1P09429 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC25.09■■□□□ 1.61
HMGB1P09429 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGB1P09429 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGB1P09429 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGB1P09429 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.09■■□□□ 1.61
HMGB1P09429 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HMGB1P09429 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
HMGB1P09429 TPRG1LP1-201ENST00000598702 760 ntBASIC25.09■■□□□ 1.61
HMGB1P09429 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
HMGB1P09429 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC25.09■■□□□ 1.61
HMGB1P09429 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
HMGB1P09429 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.08■■□□□ 1.61
HMGB1P09429 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGB1P09429 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGB1P09429 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGB1P09429 NT5C3AP1-201ENST00000394500 1012 ntBASIC25.08■■□□□ 1.61
HMGB1P09429 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.08■■□□□ 1.61
HMGB1P09429 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HMGB1P09429 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.08■■□□□ 1.61
HMGB1P09429 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.08■■□□□ 1.61
HMGB1P09429 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC25.08■■□□□ 1.61
HMGB1P09429 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
HMGB1P09429 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
HMGB1P09429 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
HMGB1P09429 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC25.07■■□□□ 1.6
HMGB1P09429 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC25.07■■□□□ 1.6
HMGB1P09429 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.07■■□□□ 1.6
HMGB1P09429 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC25.07■■□□□ 1.6
HMGB1P09429 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HMGB1P09429 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
HMGB1P09429 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HMGB1P09429 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
HMGB1P09429 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC25.06■■□□□ 1.6
HMGB1P09429 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms