Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CXCL1P09341 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
CXCL1P09341 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.47■□□□□ 0.23
CXCL1P09341 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.47■□□□□ 0.23
CXCL1P09341 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 AL592293.1-201ENST00000502889 1188 ntBASIC16.47■□□□□ 0.23
CXCL1P09341 AC022616.5-201ENST00000518796 181 ntBASIC16.47■□□□□ 0.23
CXCL1P09341 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.47■□□□□ 0.23
CXCL1P09341 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.47■□□□□ 0.23
CXCL1P09341 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
CXCL1P09341 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.47■□□□□ 0.23
CXCL1P09341 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.47■□□□□ 0.23
CXCL1P09341 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CXCL1P09341 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.47■□□□□ 0.23
CXCL1P09341 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.47■□□□□ 0.23
CXCL1P09341 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.47■□□□□ 0.23
CXCL1P09341 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CXCL1P09341 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.46■□□□□ 0.23
CXCL1P09341 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CXCL1P09341 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.46■□□□□ 0.23
CXCL1P09341 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.46■□□□□ 0.23
CXCL1P09341 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CXCL1P09341 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.22
CXCL1P09341 AP005212.1-201ENST00000581547 1997 ntBASIC16.46■□□□□ 0.22
CXCL1P09341 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CXCL1P09341 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
CXCL1P09341 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL1P09341 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
CXCL1P09341 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CXCL1P09341 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CXCL1P09341 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL1P09341 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CXCL1P09341 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.45■□□□□ 0.22
CXCL1P09341 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CXCL1P09341 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.45■□□□□ 0.22
CXCL1P09341 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.44■□□□□ 0.22
CXCL1P09341 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CXCL1P09341 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.44■□□□□ 0.22
CXCL1P09341 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CXCL1P09341 MIR4449-201ENST00000578365 66 ntBASIC16.44■□□□□ 0.22
CXCL1P09341 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CXCL1P09341 RNF126P1-201ENST00000567452 1320 ntBASIC16.44■□□□□ 0.22
CXCL1P09341 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CXCL1P09341 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CXCL1P09341 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL1P09341 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
CXCL1P09341 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CXCL1P09341 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL1P09341 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL1P09341 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC16.43■□□□□ 0.22
CXCL1P09341 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.43■□□□□ 0.22
CXCL1P09341 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL1P09341 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CXCL1P09341 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL1P09341 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CXCL1P09341 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.43■□□□□ 0.22
CXCL1P09341 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CXCL1P09341 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms