Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 OR2I1P-207ENST00000453522 948 ntBASIC20.69■□□□□ 0.9
HDAC3O15379 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
HDAC3O15379 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HDAC3O15379 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.69■□□□□ 0.9
HDAC3O15379 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC3O15379 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 FEM1AP1-201ENST00000431297 1995 ntBASIC20.68■□□□□ 0.9
HDAC3O15379 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
HDAC3O15379 AC010141.3-201ENST00000456659 717 ntBASIC20.68■□□□□ 0.9
HDAC3O15379 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.68■□□□□ 0.9
HDAC3O15379 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.68■□□□□ 0.9
HDAC3O15379 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC3O15379 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
HDAC3O15379 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
HDAC3O15379 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.67■□□□□ 0.9
HDAC3O15379 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.67■□□□□ 0.9
HDAC3O15379 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.67■□□□□ 0.9
HDAC3O15379 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HDAC3O15379 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC3O15379 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HDAC3O15379 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 AL034346.1-201ENST00000568244 1277 ntBASIC20.66■□□□□ 0.9
HDAC3O15379 AC099791.2-201ENST00000605725 427 ntBASIC20.66■□□□□ 0.9
HDAC3O15379 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC3O15379 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HDAC3O15379 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 AC003102.1-202ENST00000563394 1796 ntBASIC20.65■□□□□ 0.9
HDAC3O15379 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
HDAC3O15379 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.65■□□□□ 0.9
HDAC3O15379 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HDAC3O15379 MIR3181-201ENST00000578512 73 ntBASIC20.65■□□□□ 0.9
HDAC3O15379 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.65■□□□□ 0.9
HDAC3O15379 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC3O15379 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.64■□□□□ 0.9
HDAC3O15379 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HDAC3O15379 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.64■□□□□ 0.89
HDAC3O15379 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.64■□□□□ 0.89
HDAC3O15379 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.64■□□□□ 0.89
HDAC3O15379 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.64■□□□□ 0.89
HDAC3O15379 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HDAC3O15379 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
HDAC3O15379 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HDAC3O15379 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.63■□□□□ 0.89
HDAC3O15379 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
HDAC3O15379 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
HDAC3O15379 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms