Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
NPHP1O15259 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP1O15259 AC092068.2-201ENST00000590491 1708 ntBASIC26.82■■□□□ 1.88
NPHP1O15259 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC26.81■■□□□ 1.88
NPHP1O15259 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC26.81■■□□□ 1.88
NPHP1O15259 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
NPHP1O15259 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC26.81■■□□□ 1.88
NPHP1O15259 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP1O15259 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
NPHP1O15259 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC26.8■■□□□ 1.88
NPHP1O15259 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC26.8■■□□□ 1.88
NPHP1O15259 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 UQCRFS1P1-201ENST00000435169 820 ntBASIC26.8■■□□□ 1.88
NPHP1O15259 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 ITM2C-210ENST00000620962 501 ntBASIC26.8■■□□□ 1.88
NPHP1O15259 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
NPHP1O15259 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC26.8■■□□□ 1.88
NPHP1O15259 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP1O15259 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
NPHP1O15259 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP1O15259 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP1O15259 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC26.79■■□□□ 1.88
NPHP1O15259 AC053503.5-201ENST00000601508 636 ntBASIC26.79■■□□□ 1.88
NPHP1O15259 AC016405.3-201ENST00000607710 860 ntBASIC26.79■■□□□ 1.88
NPHP1O15259 OR10C1-204ENST00000622521 1039 ntBASIC26.79■■□□□ 1.88
NPHP1O15259 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
NPHP1O15259 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP1O15259 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP1O15259 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP1O15259 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.78■■□□□ 1.88
NPHP1O15259 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
NPHP1O15259 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC26.78■■□□□ 1.88
NPHP1O15259 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC26.78■■□□□ 1.88
NPHP1O15259 EEF1DP3-203ENST00000566025 782 ntBASIC26.78■■□□□ 1.88
NPHP1O15259 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC26.78■■□□□ 1.88
NPHP1O15259 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP1O15259 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP1O15259 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP1O15259 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP1O15259 PREB-202ENST00000406567 1910 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP1O15259 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC26.78■■□□□ 1.88
NPHP1O15259 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP1O15259 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 AP006587.3-201ENST00000525742 1516 ntBASIC26.77■■□□□ 1.88
NPHP1O15259 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.77■■□□□ 1.88
NPHP1O15259 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
NPHP1O15259 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP1O15259 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.76■■□□□ 1.88
NPHP1O15259 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC26.76■■□□□ 1.88
NPHP1O15259 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
NPHP1O15259 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
NPHP1O15259 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
NPHP1O15259 BX276092.2-201ENST00000417668 665 ntBASIC26.76■■□□□ 1.87
NPHP1O15259 AC093787.1-201ENST00000450396 207 ntBASIC26.76■■□□□ 1.87
NPHP1O15259 AC007322.4-201ENST00000509611 723 ntBASIC26.76■■□□□ 1.87
NPHP1O15259 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC26.76■■□□□ 1.87
NPHP1O15259 AC008175.2-201ENST00000612840 297 ntBASIC26.76■■□□□ 1.87
NPHP1O15259 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
NPHP1O15259 LINC00526-201ENST00000581067 1875 ntBASIC26.76■■□□□ 1.87
NPHP1O15259 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC26.76■■□□□ 1.87
NPHP1O15259 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC26.75■■□□□ 1.87
NPHP1O15259 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
NPHP1O15259 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.75■■□□□ 1.87
NPHP1O15259 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
NPHP1O15259 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
NPHP1O15259 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
NPHP1O15259 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
NPHP1O15259 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC26.74■■□□□ 1.87
NPHP1O15259 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.74■■□□□ 1.87
NPHP1O15259 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
NPHP1O15259 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
NPHP1O15259 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.74■■□□□ 1.87
NPHP1O15259 MARS-235ENST00000630803 183 ntTSL 3 BASIC26.74■■□□□ 1.87
NPHP1O15259 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
NPHP1O15259 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC26.74■■□□□ 1.87
NPHP1O15259 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
NPHP1O15259 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC26.73■■□□□ 1.87
NPHP1O15259 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
NPHP1O15259 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.73■■□□□ 1.87
NPHP1O15259 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
NPHP1O15259 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC26.73■■□□□ 1.87
NPHP1O15259 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC26.73■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms