Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.43■□□□□ 0.86
CACNA1AO00555 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CACNA1AO00555 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.43■□□□□ 0.86
CACNA1AO00555 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.43■□□□□ 0.86
CACNA1AO00555 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 DUSP8P5-201ENST00000422884 1815 ntBASIC20.43■□□□□ 0.86
CACNA1AO00555 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.43■□□□□ 0.86
CACNA1AO00555 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.43■□□□□ 0.86
CACNA1AO00555 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.43■□□□□ 0.86
CACNA1AO00555 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CACNA1AO00555 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 AC092803.2-201ENST00000564287 1899 ntBASIC20.42■□□□□ 0.86
CACNA1AO00555 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.42■□□□□ 0.86
CACNA1AO00555 DUSP5P1-201ENST00000441325 1139 ntBASIC20.42■□□□□ 0.86
CACNA1AO00555 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.42■□□□□ 0.86
CACNA1AO00555 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.42■□□□□ 0.86
CACNA1AO00555 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CACNA1AO00555 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.42■□□□□ 0.86
CACNA1AO00555 AC023511.2-201ENST00000618803 211 ntBASIC20.42■□□□□ 0.86
CACNA1AO00555 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CACNA1AO00555 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CACNA1AO00555 AP003071.4-201ENST00000562276 1284 ntBASIC20.42■□□□□ 0.86
CACNA1AO00555 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.42■□□□□ 0.86
CACNA1AO00555 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.42■□□□□ 0.86
CACNA1AO00555 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.41■□□□□ 0.86
CACNA1AO00555 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.41■□□□□ 0.86
CACNA1AO00555 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CACNA1AO00555 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CACNA1AO00555 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CACNA1AO00555 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
CACNA1AO00555 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.41■□□□□ 0.86
CACNA1AO00555 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CACNA1AO00555 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
CACNA1AO00555 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CACNA1AO00555 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CACNA1AO00555 EEF1DP3-203ENST00000566025 782 ntBASIC20.4■□□□□ 0.86
CACNA1AO00555 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.4■□□□□ 0.86
CACNA1AO00555 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.4■□□□□ 0.86
CACNA1AO00555 MIR6786-201ENST00000616843 113 ntBASIC20.4■□□□□ 0.86
CACNA1AO00555 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CACNA1AO00555 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.4■□□□□ 0.86
CACNA1AO00555 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CACNA1AO00555 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.4■□□□□ 0.86
CACNA1AO00555 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.4■□□□□ 0.86
CACNA1AO00555 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.4■□□□□ 0.86
CACNA1AO00555 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CACNA1AO00555 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CACNA1AO00555 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.39■□□□□ 0.85
CACNA1AO00555 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.39■□□□□ 0.85
CACNA1AO00555 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CACNA1AO00555 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CACNA1AO00555 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CACNA1AO00555 KRT17P1-201ENST00000399211 1546 ntBASIC20.39■□□□□ 0.85
CACNA1AO00555 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.39■□□□□ 0.85
CACNA1AO00555 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.38■□□□□ 0.85
CACNA1AO00555 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CACNA1AO00555 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.38■□□□□ 0.85
CACNA1AO00555 RARRES2P10-201ENST00000564312 460 ntBASIC20.38■□□□□ 0.85
CACNA1AO00555 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.38■□□□□ 0.85
CACNA1AO00555 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CACNA1AO00555 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.38■□□□□ 0.85
CACNA1AO00555 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.38■□□□□ 0.85
CACNA1AO00555 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.38■□□□□ 0.85
CACNA1AO00555 MTDHP1-201ENST00000605323 784 ntBASIC20.38■□□□□ 0.85
CACNA1AO00555 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CACNA1AO00555 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CACNA1AO00555 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.38■□□□□ 0.85
CACNA1AO00555 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.37■□□□□ 0.85
CACNA1AO00555 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.37■□□□□ 0.85
CACNA1AO00555 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.37■□□□□ 0.85
CACNA1AO00555 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CACNA1AO00555 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CACNA1AO00555 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CACNA1AO00555 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.37■□□□□ 0.85
CACNA1AO00555 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.37■□□□□ 0.85
CACNA1AO00555 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.37■□□□□ 0.85
CACNA1AO00555 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CACNA1AO00555 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.37■□□□□ 0.85
CACNA1AO00555 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CACNA1AO00555 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CACNA1AO00555 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms