Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.19■□□□□ 0.82
UPK1AO00322 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
UPK1AO00322 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
UPK1AO00322 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.18■□□□□ 0.82
UPK1AO00322 EDA-201ENST00000338901 1233 ntBASIC20.18■□□□□ 0.82
UPK1AO00322 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.18■□□□□ 0.82
UPK1AO00322 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.18■□□□□ 0.82
UPK1AO00322 AC008764.7-201ENST00000593779 1081 ntBASIC20.18■□□□□ 0.82
UPK1AO00322 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
UPK1AO00322 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UPK1AO00322 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
UPK1AO00322 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
UPK1AO00322 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.17■□□□□ 0.82
UPK1AO00322 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.17■□□□□ 0.82
UPK1AO00322 AC133561.4-201ENST00000566112 224 ntBASIC20.17■□□□□ 0.82
UPK1AO00322 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.17■□□□□ 0.82
UPK1AO00322 AC126544.1-201ENST00000580842 1059 ntBASIC20.17■□□□□ 0.82
UPK1AO00322 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.17■□□□□ 0.82
UPK1AO00322 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.17■□□□□ 0.82
UPK1AO00322 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
UPK1AO00322 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UPK1AO00322 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
UPK1AO00322 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.17■□□□□ 0.82
UPK1AO00322 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.16■□□□□ 0.82
UPK1AO00322 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.16■□□□□ 0.82
UPK1AO00322 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.16■□□□□ 0.82
UPK1AO00322 AC099791.1-201ENST00000416440 715 ntBASIC20.16■□□□□ 0.82
UPK1AO00322 AP001330.3-201ENST00000520123 633 ntBASIC20.16■□□□□ 0.82
UPK1AO00322 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 AL121603.2-201ENST00000557373 2117 ntBASIC20.16■□□□□ 0.82
UPK1AO00322 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 AL139246.5-201ENST00000606645 996 ntBASIC20.16■□□□□ 0.82
UPK1AO00322 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
UPK1AO00322 AL355001.2-201ENST00000620617 1191 ntBASIC20.16■□□□□ 0.82
UPK1AO00322 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.16■□□□□ 0.82
UPK1AO00322 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
UPK1AO00322 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.15■□□□□ 0.82
UPK1AO00322 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 AC027682.1-201ENST00000562846 899 ntBASIC20.15■□□□□ 0.82
UPK1AO00322 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.15■□□□□ 0.82
UPK1AO00322 AL031432.3-201ENST00000607698 485 ntBASIC20.15■□□□□ 0.82
UPK1AO00322 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.15■□□□□ 0.82
UPK1AO00322 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.15■□□□□ 0.82
UPK1AO00322 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
UPK1AO00322 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
UPK1AO00322 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
UPK1AO00322 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
UPK1AO00322 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UPK1AO00322 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
UPK1AO00322 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
UPK1AO00322 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK1AO00322 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.14■□□□□ 0.81
UPK1AO00322 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UPK1AO00322 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK1AO00322 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.14■□□□□ 0.81
UPK1AO00322 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UPK1AO00322 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.14■□□□□ 0.81
UPK1AO00322 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.14■□□□□ 0.81
UPK1AO00322 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.14■□□□□ 0.81
UPK1AO00322 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UPK1AO00322 LINC01521-201ENST00000504184 1943 ntBASIC20.14■□□□□ 0.81
UPK1AO00322 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
UPK1AO00322 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.13■□□□□ 0.81
UPK1AO00322 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.13■□□□□ 0.81
UPK1AO00322 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.13■□□□□ 0.81
UPK1AO00322 IGHV3-19-201ENST00000521488 291 ntBASIC20.13■□□□□ 0.81
UPK1AO00322 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
UPK1AO00322 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms