Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.344e-7■■■■□ 23.4
SF3B1O75533 MED17-217ENST00000639189 3235 ntTSL 516.67■□□□□ 0.264e-7■■■■□ 23.4
SF3B1O75533 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.65■□□□□ 0.14e-7■■■■□ 23.4
SF3B1O75533 CRELD1-209ENST00000482691 690 ntTSL 315.52■□□□□ 0.083e-6■■■■□ 23.4
SF3B1O75533 CRELD1-205ENST00000435417 966 ntTSL 515.35■□□□□ 0.053e-6■■■■□ 23.4
SF3B1O75533 MED17-202ENST00000507258 3983 ntTSL 514.43□□□□□ -0.14e-7■■■■□ 23.4
SF3B1O75533 MED17-222ENST00000640027 4569 ntTSL 514.14□□□□□ -0.154e-7■■■■□ 23.4
SF3B1O75533 CRELD1-210ENST00000489674 437 ntTSL 514.12□□□□□ -0.153e-6■■■■□ 23.4
SF3B1O75533 SUMF2-218ENST00000529457 568 ntTSL 213.72□□□□□ -0.214e-7■■■■□ 23.4
SF3B1O75533 MED17-214ENST00000638487 3622 ntTSL 513.44□□□□□ -0.264e-7■■■■□ 23.4
SF3B1O75533 MAP3K4-208ENST00000536852 2526 ntTSL 211.79□□□□□ -0.524e-7■■■■□ 23.4
SF3B1O75533 MED17-219ENST00000639523 2137 ntTSL 511.44□□□□□ -0.584e-7■■■■□ 23.4
SF3B1O75533 FBXL13-210ENST00000471074 987 ntTSL 59.57□□□□□ -0.884e-7■■■■□ 23.4
SF3B1O75533 BAZ2A-204ENST00000547647 570 ntTSL 29.46□□□□□ -0.94e-7■■■■□ 23.4
SF3B1O75533 GFPT1-204ENST00000494201 625 ntTSL 57.78□□□□□ -1.164e-7■■■■□ 23.4
SF3B1O75533 LINC01088-206ENST00000510667 534 ntTSL 37.52□□□□□ -1.214e-7■■■■□ 23.4
SF3B1O75533 FBXL13-211ENST00000477915 743 ntTSL 56.66□□□□□ -1.344e-7■■■■□ 23.4
SF3B1O75533 MED17-224ENST00000640411 3204 ntTSL 25.41□□□□□ -1.544e-7■■■■□ 23.4
SF3B1O75533 MLLT10-210ENST00000468309 647 ntTSL 35.07□□□□□ -1.63e-6■■■■□ 23.4
SF3B1O75533 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.92□□□□□ -1.624e-7■■■■□ 23.4
SF3B1O75533 LINC01088-209ENST00000512130 525 ntTSL 34.48□□□□□ -1.694e-7■■■■□ 23.4
SF3B1O75533 MED17-204ENST00000525613 2875 ntTSL 24.14□□□□□ -1.754e-7■■■■□ 23.4
SF3B1O75533 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.14□□□□□ -1.754e-7■■■■□ 23.4
SF3B1O75533 MED17-223ENST00000640077 2210 ntTSL 53.96□□□□□ -1.784e-7■■■■□ 23.4
SF3B1O75533 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.75□□□□□ -1.814e-7■■■■□ 23.4
SF3B1O75533 MED17-206ENST00000529626 2275 ntTSL 1 (best)3.71□□□□□ -1.824e-7■■■■□ 23.4
SF3B1O75533 SNX4-202ENST00000465505 591 ntTSL 53.01□□□□□ -1.934e-7■■■■□ 23.4
SF3B1O75533 LINC01088-211ENST00000515597 664 ntTSL 1 (best)2.28□□□□□ -2.044e-7■■■■□ 23.4
SF3B1O75533 LINC01088-210ENST00000513153 695 ntTSL 32.06□□□□□ -2.084e-7■■■■□ 23.4
SF3B1O75533 LINC01088-204ENST00000507761 842 ntTSL 21.96□□□□□ -2.14e-7■■■■□ 23.4
SF3B1O75533 MAP3K4-209ENST00000539610 295 ntTSL 30.71□□□□□ -2.34e-7■■■■□ 23.4
SF3B1O75533 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.464e-6■■■■□ 23.4
SF3B1O75533 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.214e-6■■■■□ 23.4
SF3B1O75533 UROS-209ENST00000470483 777 ntTSL 215.97■□□□□ 0.154e-6■■■■□ 23.4
SF3B1O75533 UROS-210ENST00000484541 857 ntTSL 315.34■□□□□ 0.054e-6■■■■□ 23.4
SF3B1O75533 UROS-207ENST00000464267 1038 ntTSL 314.56□□□□□ -0.084e-6■■■■□ 23.4
SF3B1O75533 UROS-208ENST00000465577 721 ntTSL 514.56□□□□□ -0.084e-6■■■■□ 23.4
SF3B1O75533 UROS-212ENST00000622016 563 ntTSL 57.82□□□□□ -1.164e-6■■■■□ 23.4
SF3B1O75533 UROS-211ENST00000616800 441 ntTSL 51.38□□□□□ -2.194e-6■■■■□ 23.4
SF3B1O75533 SLC25A36-211ENST00000512506 727 ntTSL 57.91□□□□□ -1.144e-7■■■■□ 23.4
SF3B1O75533 SLC25A36-210ENST00000512023 817 ntTSL 56.66□□□□□ -1.344e-7■■■■□ 23.4
SF3B1O75533 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.444e-6■■■■□ 23.3
SF3B1O75533 LUC7L3-208ENST00000505658 7040 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.834e-6■■■■□ 23.3
SF3B1O75533 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.894e-8■■■■□ 23.3
SF3B1O75533 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.784e-8■■■■□ 23.3
SF3B1O75533 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.08■□□□□ 0.334e-8■■■■□ 23.3
SF3B1O75533 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.224e-8■■■■□ 23.3
SF3B1O75533 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.214e-8■■■■□ 23.3
SF3B1O75533 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.064e-8■■■■□ 23.3
SF3B1O75533 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.064e-8■■■■□ 23.3
SF3B1O75533 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.21■□□□□ 0.034e-8■■■■□ 23.3
SF3B1O75533 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.024e-8■■■■□ 23.3
SF3B1O75533 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.044e-8■■■■□ 23.3
SF3B1O75533 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC14.35□□□□□ -0.114e-8■■■■□ 23.3
SF3B1O75533 ALDOA-211ENST00000564521 2534 ntTSL 513.76□□□□□ -0.214e-8■■■■□ 23.3
SF3B1O75533 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.22■□□□□ 0.511e-6■■■■□ 23.3
SF3B1O75533 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.88■□□□□ 0.131e-6■■■■□ 23.3
SF3B1O75533 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC14.59□□□□□ -0.071e-6■■■■□ 23.3
SF3B1O75533 ABHD5-201ENST00000013894 833 ntTSL 319.99■□□□□ 0.795e-6■■■■□ 23.3
SF3B1O75533 MARS-215ENST00000548944 294 ntTSL 315.49■□□□□ 0.071e-9■■■■□ 23.3
SF3B1O75533 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.144e-8■■■■□ 23.3
SF3B1O75533 AC079466.1-201ENST00000587961 4453 ntTSL 2 BASIC9.25□□□□□ -0.932e-6■■■■□ 23.3
SF3B1O75533 FASN-213ENST00000637693 100 ntTSL 510.21□□□□□ -0.782e-7■■■■□ 23.2
SF3B1O75533 HNRNPH3-207ENST00000480987 752 ntTSL 413.97□□□□□ -0.172e-6■■■■□ 23.2
SF3B1O75533 HNRNPH3-203ENST00000461310 648 ntTSL 59.01□□□□□ -0.972e-6■■■■□ 23.2
SF3B1O75533 HNRNPH3-204ENST00000467249 566 ntTSL 27.76□□□□□ -1.172e-6■■■■□ 23.2
SF3B1O75533 HNRNPH3-209ENST00000486854 635 ntTSL 26.76□□□□□ -1.332e-6■■■■□ 23.2
SF3B1O75533 AL034397.3-202ENST00000621933 1815 ntTSL 1 (best) BASIC8.17□□□□□ -1.11e-10■■■■□ 23.2
SF3B1O75533 AL034397.3-201ENST00000618234 1690 ntTSL 1 (best)7.75□□□□□ -1.171e-10■■■■□ 23.2
SF3B1O75533 NARF-207ENST00000577410 873 ntTSL 526.7■■□□□ 1.871e-9■■■■□ 23.1
SF3B1O75533 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.44■■□□□ 1.181e-9■■■■□ 23.1
SF3B1O75533 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.33■■□□□ 1.161e-9■■■■□ 23.1
SF3B1O75533 NARF-221ENST00000583181 505 ntTSL 522.05■■□□□ 1.121e-9■■■■□ 23.1
SF3B1O75533 NARF-216ENST00000581202 1013 ntTSL 521.48■■□□□ 1.031e-9■■■■□ 23.1
SF3B1O75533 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.43■□□□□ 0.71e-9■■■■□ 23.1
SF3B1O75533 NARF-217ENST00000581743 785 ntTSL 518.43■□□□□ 0.541e-9■■■■□ 23.1
SF3B1O75533 NARF-224ENST00000584411 525 ntTSL 418.36■□□□□ 0.531e-9■■■■□ 23.1
SF3B1O75533 NARF-218ENST00000581795 1430 ntTSL 218.13■□□□□ 0.491e-9■■■■□ 23.1
SF3B1O75533 NARF-203ENST00000374611 1722 ntTSL 518.04■□□□□ 0.481e-9■■■■□ 23.1
SF3B1O75533 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.83■□□□□ 0.441e-9■■■■□ 23.1
SF3B1O75533 NARF-213ENST00000579198 599 ntTSL 517.69■□□□□ 0.421e-9■■■■□ 23.1
SF3B1O75533 NARF-208ENST00000577432 866 ntTSL 517.49■□□□□ 0.391e-9■■■■□ 23.1
SF3B1O75533 NARF-214ENST00000580296 733 ntTSL 317.08■□□□□ 0.321e-9■■■■□ 23.1
SF3B1O75533 NARF-223ENST00000584192 495 ntTSL 315.76■□□□□ 0.111e-9■■■■□ 23.1
SF3B1O75533 NARF-210ENST00000578082 841 ntTSL 415.72■□□□□ 0.111e-9■■■■□ 23.1
SF3B1O75533 NARF-220ENST00000582907 1454 ntTSL 515.46■□□□□ 0.071e-9■■■■□ 23.1
SF3B1O75533 NARF-215ENST00000580748 577 ntTSL 512.49□□□□□ -0.411e-9■■■■□ 23.1
SF3B1O75533 NARF-201ENST00000309794 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.421e-9■■■■□ 23.1
SF3B1O75533 NARF-209ENST00000577812 2598 ntTSL 512.21□□□□□ -0.461e-9■■■■□ 23.1
SF3B1O75533 BAGE2-201ENST00000470054 1891 ntTSL 1 (best)15.87■□□□□ 0.133e-6■■■■□ 23.1
SF3B1O75533 RABGGTB-208ENST00000471759 2137 ntTSL 26.67□□□□□ -1.346e-7■■■■□ 23.1
SF3B1O75533 RABGGTB-212ENST00000491266 961 ntTSL 36.45□□□□□ -1.386e-7■■■■□ 23.1
SF3B1O75533 RABGGTB-207ENST00000470201 848 ntTSL 33.86□□□□□ -1.796e-7■■■■□ 23.1
SF3B1O75533 ACTN4-208ENST00000497637 877 ntTSL 220.42■□□□□ 0.863e-6■■■■□ 23.1
SF3B1O75533 ACTN4-205ENST00000477174 544 ntTSL 314.65□□□□□ -0.063e-6■■■■□ 23.1
SF3B1O75533 ACTN4-204ENST00000440400 3180 ntTSL 513.72□□□□□ -0.213e-6■■■■□ 23.1
SF3B1O75533 HNRNPK-206ENST00000457156 1283 ntTSL 519.85■□□□□ 0.773e-6■■■■□ 23.1
SF3B1O75533 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.593e-6■■■■□ 23.1
SF3B1O75533 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.093e-6■■■■□ 23.1
SF3B1O75533 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC9.04□□□□□ -0.963e-6■■■■□ 23.1
Retrieved 100 of 46,956 protein–RNA pairs in 3405 ms