RNA–Protein interactions for RNA: ENST00000465505.2

SNX4-202, Transcript of sorting nexin 4, humanhuman

TSL 5

Gene SNX4, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-202ENST00000465505 AEBP2Q6ZN18 517 aaPredicted RBP20.16■□□□□ 0.82
SNX4-202ENST00000465505 CHIC1Q5VXU3 224 aa19.28■□□□□ 0.68
SNX4-202ENST00000465505 SENP3Q9H4L4 574 aaPredicted RBP17.13■□□□□ 0.33
SNX4-202ENST00000465505 PHF23Q9BUL5 403 aaPredicted RBP16.96■□□□□ 0.31
SNX4-202ENST00000465505 FOXD1Q16676 465 aa15.98■□□□□ 0.15
SNX4-202ENST00000465505 PLPPR3Q6T4P5 718 aa15.46■□□□□ 0.07
SNX4-202ENST00000465505 PPP6R1Q9UPN7 881 aa15.09■□□□□ 0.01
SNX4-202ENST00000465505 ADRA2BP18089 450 aa15.02■□□□□ -0
SNX4-202ENST00000465505 PIAS4Q8N2W9 510 aaPredicted RBP14.93□□□□□ -0.02
SNX4-202ENST00000465505 MSH5O43196 834 aa14.85□□□□□ -0.03
SNX4-202ENST00000465505 POTEDQ86YR6 584 aa14.25□□□□□ -0.13
SNX4-202ENST00000465505 MAPK8IP2Q13387 824 aaPredicted RBP13.77□□□□□ -0.21
SNX4-202ENST00000465505 SCAF1Q9H7N4 1312 aaKnown RBP13.71□□□□□ -0.21
SNX4-202ENST00000465505 DMRT2Q9Y5R5 561 aa13.62□□□□□ -0.23
SNX4-202ENST00000465505 PPP4R3CPQ6ZMV5 832 aa13.59□□□□□ -0.23
SNX4-202ENST00000465505 CNKSR2Q8WXI2 1034 aa13.29□□□□□ -0.28
SNX4-202ENST00000465505 HOXD11P31277 338 aaPredicted RBP13.2□□□□□ -0.3
SNX4-202ENST00000465505 RNF216Q9NWF9 866 aaPredicted RBP13.13□□□□□ -0.31
SNX4-202ENST00000465505 NCBP3Q53F19 620 aaKnown RBP13.09□□□□□ -0.31
SNX4-202ENST00000465505 DCAF8L1A6NGE4 600 aa13.01□□□□□ -0.33
SNX4-202ENST00000465505 NPM3O75607 178 aaKnown RBP12.93□□□□□ -0.34
SNX4-202ENST00000465505 KCNA4P22459 653 aa12.83□□□□□ -0.36
SNX4-202ENST00000465505 RNF39Q9H2S5 420 aa12.71□□□□□ -0.37
SNX4-202ENST00000465505 DNAJC5BQ9UF47 199 aa12.71□□□□□ -0.37
SNX4-202ENST00000465505 CACNB1Q02641 598 aaPredicted RBP12.65□□□□□ -0.38
SNX4-202ENST00000465505 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.54□□□□□ -0.44e-6■■■■□ 20.3
SNX4-202ENST00000465505 C1QBPQ07021 282 aaKnown RBP12.53□□□□□ -0.4
SNX4-202ENST00000465505 SLC4A2P04920 1241 aa12.33□□□□□ -0.44
SNX4-202ENST00000465505 U3KPZ7 1027 aaPredicted RBP12.31□□□□□ -0.44
SNX4-202ENST00000465505 SLC4A1APQ9BWU0 796 aaKnown RBP12.12□□□□□ -0.47
SNX4-202ENST00000465505 SPINK5Q9NQ38 1064 aaPredicted RBP12.09□□□□□ -0.47
SNX4-202ENST00000465505 CAPN15O75808 1086 aa12.03□□□□□ -0.48
SNX4-202ENST00000465505 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.99□□□□□ -0.49
SNX4-202ENST00000465505 HNRNPUL2Q1KMD3 747 aaKnown RBP11.99□□□□□ -0.49
SNX4-202ENST00000465505 DSG3P32926 999 aa11.96□□□□□ -0.49
SNX4-202ENST00000465505 APLP2Q06481 763 aa11.94□□□□□ -0.5
SNX4-202ENST00000465505 SAMD1Q6SPF0 538 aaPredicted RBP11.94□□□□□ -0.5
SNX4-202ENST00000465505 MYCNP04198 464 aaPredicted RBP11.93□□□□□ -0.5
SNX4-202ENST00000465505 TRHP20396 242 aaPredicted RBP11.89□□□□□ -0.51
SNX4-202ENST00000465505 FOXD4L1Q9NU39 408 aa11.89□□□□□ -0.51
SNX4-202ENST00000465505 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
SNX4-202ENST00000465505 ZBTB22O15209 634 aa11.81□□□□□ -0.52
SNX4-202ENST00000465505 ABCB7O75027 752 aa11.78□□□□□ -0.52
SNX4-202ENST00000465505 ATF5Q9Y2D1 282 aaPredicted RBP11.69□□□□□ -0.54
SNX4-202ENST00000465505 POLA2Q14181 598 aa11.64□□□□□ -0.55
SNX4-202ENST00000465505 ATXN8OSP0DMR3 200 aa11.53□□□□□ -0.56
SNX4-202ENST00000465505 CSRNP3Q8WYN3 585 aa11.42□□□□□ -0.58
SNX4-202ENST00000465505 RBM42Q9BTD8 480 aaKnown RBP11.37□□□□□ -0.59
SNX4-202ENST00000465505 ZBTB12Q9Y330 459 aaPredicted RBP11.36□□□□□ -0.59
SNX4-202ENST00000465505 EHMT2Q96KQ7 1210 aa11.3□□□□□ -0.6
SNX4-202ENST00000465505 OSCARQ8IYS5 282 aa11.22□□□□□ -0.61
SNX4-202ENST00000465505 POTEHQ6S545 545 aa11.19□□□□□ -0.62
SNX4-202ENST00000465505 AKT1S1Q96B36 256 aa11.17□□□□□ -0.62
SNX4-202ENST00000465505 FBLN2P98095 1184 aa11.16□□□□□ -0.62
SNX4-202ENST00000465505 MKRN4PQ13434 485 aaPredicted RBP11.15□□□□□ -0.62
SNX4-202ENST00000465505 CHRDL2Q6WN34 429 aa11.08□□□□□ -0.64
SNX4-202ENST00000465505 REM2Q8IYK8 340 aaPredicted RBP11.07□□□□□ -0.64
SNX4-202ENST00000465505 SPDYE2BA6NHP3 402 aa11.05□□□□□ -0.64
SNX4-202ENST00000465505 SPDYE6P0CI01 402 aa11.05□□□□□ -0.64
SNX4-202ENST00000465505 SPDYE2Q495Y8 402 aa11.05□□□□□ -0.64
SNX4-202ENST00000465505 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
SNX4-202ENST00000465505 PITPNM1O00562 1244 aa10.94□□□□□ -0.66
SNX4-202ENST00000465505 SSUH2Q9Y2M2 353 aa10.94□□□□□ -0.66
SNX4-202ENST00000465505 PIP4P2Q8N4L2 257 aa10.86□□□□□ -0.67
SNX4-202ENST00000465505 FXR2P51116 673 aaKnown RBP eCLIP10.83□□□□□ -0.68
SNX4-202ENST00000465505 SPDYE1Q8NFV5 336 aaPredicted RBP10.81□□□□□ -0.68
SNX4-202ENST00000465505 PABPN1Q86U42 306 aaKnown RBP eCLIP10.79□□□□□ -0.68
SNX4-202ENST00000465505 CLEC11AQ9Y240 323 aa10.78□□□□□ -0.68
SNX4-202ENST00000465505 SPDYE4A6NLX3 237 aa10.68□□□□□ -0.7
SNX4-202ENST00000465505 PRKAR2AP13861 404 aaKnown RBP10.66□□□□□ -0.7
SNX4-202ENST00000465505 PRR29P0C7W0 189 aa10.64□□□□□ -0.71
SNX4-202ENST00000465505 HAX1O00165 279 aa10.61□□□□□ -0.71
SNX4-202ENST00000465505 CHADLQ6NUI6 762 aa10.57□□□□□ -0.72
SNX4-202ENST00000465505 SP7Q8TDD2 431 aaPredicted RBP10.56□□□□□ -0.72
SNX4-202ENST00000465505 EVX2Q03828 476 aa10.54□□□□□ -0.72
SNX4-202ENST00000465505 STAG3Q9UJ98 1225 aa10.53□□□□□ -0.72
SNX4-202ENST00000465505 PROM2Q8N271 834 aa10.48□□□□□ -0.73
SNX4-202ENST00000465505 C19orf67A6NJJ6 358 aa10.47□□□□□ -0.73
SNX4-202ENST00000465505 FARP1Q9Y4F1 1045 aaPredicted RBP10.44□□□□□ -0.74
SNX4-202ENST00000465505 CREBZFQ9NS37 354 aa10.43□□□□□ -0.74
SNX4-202ENST00000465505 CD44P16070 742 aaKnown RBP10.31□□□□□ -0.76
SNX4-202ENST00000465505 FKBP8Q14318 412 aa10.3□□□□□ -0.76
SNX4-202ENST00000465505 MNX1P50219 401 aaPredicted RBP10.29□□□□□ -0.76
SNX4-202ENST00000465505 GABBR2O75899 941 aa10.28□□□□□ -0.76
SNX4-202ENST00000465505 NPM1P06748 294 aaKnown RBP eCLIP10.21□□□□□ -0.77
SNX4-202ENST00000465505 ZRANB1Q9UGI0 708 aa10.21□□□□□ -0.77
SNX4-202ENST00000465505 MIER1Q8N108 512 aa10.17□□□□□ -0.78
SNX4-202ENST00000465505 ZNF579Q8NAF0 562 aaKnown RBP10.17□□□□□ -0.78
SNX4-202ENST00000465505 CLCN6P51797 869 aa10.16□□□□□ -0.78
SNX4-202ENST00000465505 PAK3O75914 559 aaPredicted RBP10.12□□□□□ -0.79
SNX4-202ENST00000465505 PLEKHG5O94827 1062 aa10.11□□□□□ -0.79
SNX4-202ENST00000465505 PLCD3Q8N3E9 789 aa10.09□□□□□ -0.79
SNX4-202ENST00000465505 POTEIP0CG38 1075 aa10.08□□□□□ -0.8
SNX4-202ENST00000465505 PHF12Q96QT6 1004 aa10.07□□□□□ -0.8
SNX4-202ENST00000465505 GALR2O43603 387 aaPredicted RBP10.05□□□□□ -0.8
SNX4-202ENST00000465505 FBXO3Q9UK99 471 aa10.05□□□□□ -0.8
SNX4-202ENST00000465505 TSPYL2Q9H2G4 693 aaPredicted RBP10.04□□□□□ -0.8
SNX4-202ENST00000465505 RASEFQ8IZ41 740 aa10.01□□□□□ -0.81
SNX4-202ENST00000465505 DCBLD2Q96PD2 775 aa10.01□□□□□ -0.81
SNX4-202ENST00000465505 CCDC61Q9Y6R9 512 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms