RNA–Protein interactions for RNA: ENST00000509088.5

LINC01088-205, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 1 (best) BASIC

Gene LINC01088, Length 756 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-205ENST00000509088 AEBP2Q6ZN18 517 aaPredicted RBP32.34■■■□□ 2.77
LINC01088-205ENST00000509088 CHIC1Q5VXU3 224 aa30.77■■■□□ 2.52
LINC01088-205ENST00000509088 SENP3Q9H4L4 574 aaPredicted RBP27.4■■□□□ 1.98
LINC01088-205ENST00000509088 PHF23Q9BUL5 403 aaPredicted RBP27.11■■□□□ 1.93
LINC01088-205ENST00000509088 FOXD1Q16676 465 aa25.62■■□□□ 1.69
LINC01088-205ENST00000509088 PLPPR3Q6T4P5 718 aa24.58■■□□□ 1.53
LINC01088-205ENST00000509088 PPP6R1Q9UPN7 881 aa24.12■■□□□ 1.45
LINC01088-205ENST00000509088 ADRA2BP18089 450 aa24■■□□□ 1.43
LINC01088-205ENST00000509088 PIAS4Q8N2W9 510 aaPredicted RBP23.89■■□□□ 1.41
LINC01088-205ENST00000509088 MSH5O43196 834 aa23.79■■□□□ 1.4
LINC01088-205ENST00000509088 POTEDQ86YR6 584 aa23.06■■□□□ 1.28
LINC01088-205ENST00000509088 MAPK8IP2Q13387 824 aaPredicted RBP22.02■■□□□ 1.12
LINC01088-205ENST00000509088 DMRT2Q9Y5R5 561 aa21.8■■□□□ 1.08
LINC01088-205ENST00000509088 SCAF1Q9H7N4 1312 aaKnown RBP21.78■■□□□ 1.08
LINC01088-205ENST00000509088 PPP4R3CPQ6ZMV5 832 aa21.61■■□□□ 1.05
LINC01088-205ENST00000509088 CNKSR2Q8WXI2 1034 aa21.13■□□□□ 0.97
LINC01088-205ENST00000509088 HOXD11P31277 338 aaPredicted RBP21.08■□□□□ 0.97
LINC01088-205ENST00000509088 RNF216Q9NWF9 866 aaPredicted RBP20.92■□□□□ 0.94
LINC01088-205ENST00000509088 DCAF8L1A6NGE4 600 aa20.78■□□□□ 0.92
LINC01088-205ENST00000509088 NCBP3Q53F19 620 aaKnown RBP20.71■□□□□ 0.91
LINC01088-205ENST00000509088 NPM3O75607 178 aaKnown RBP20.56■□□□□ 0.88
LINC01088-205ENST00000509088 RNF39Q9H2S5 420 aa20.4■□□□□ 0.86
LINC01088-205ENST00000509088 KCNA4P22459 653 aa20.32■□□□□ 0.84
LINC01088-205ENST00000509088 CACNB1Q02641 598 aaPredicted RBP20.31■□□□□ 0.84
LINC01088-205ENST00000509088 DNAJC5BQ9UF47 199 aa20.29■□□□□ 0.84
LINC01088-205ENST00000509088 C1QBPQ07021 282 aaKnown RBP20.04■□□□□ 0.8
LINC01088-205ENST00000509088 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.97■□□□□ 0.79
LINC01088-205ENST00000509088 U3KPZ7 1027 aaPredicted RBP19.7■□□□□ 0.74
LINC01088-205ENST00000509088 SLC4A2P04920 1241 aa19.65■□□□□ 0.74
LINC01088-205ENST00000509088 SPINK5Q9NQ38 1064 aaPredicted RBP19.37■□□□□ 0.69
LINC01088-205ENST00000509088 CAPN15O75808 1086 aa19.21■□□□□ 0.67
LINC01088-205ENST00000509088 DSG3P32926 999 aa19.16■□□□□ 0.66
LINC01088-205ENST00000509088 SLC4A1APQ9BWU0 796 aaKnown RBP19.13■□□□□ 0.65
LINC01088-205ENST00000509088 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.64
LINC01088-205ENST00000509088 HNRNPUL2Q1KMD3 747 aaKnown RBP19.02■□□□□ 0.64
LINC01088-205ENST00000509088 SAMD1Q6SPF0 538 aaPredicted RBP18.96■□□□□ 0.63
LINC01088-205ENST00000509088 MYCNP04198 464 aaPredicted RBP18.94■□□□□ 0.62
LINC01088-205ENST00000509088 TRHP20396 242 aaPredicted RBP18.94■□□□□ 0.62
LINC01088-205ENST00000509088 APLP2Q06481 763 aa18.94■□□□□ 0.62
LINC01088-205ENST00000509088 ZNF219Q9P2Y4 722 aaPredicted RBP18.91■□□□□ 0.62
LINC01088-205ENST00000509088 FOXD4L1Q9NU39 408 aa18.85■□□□□ 0.61
LINC01088-205ENST00000509088 ABCB7O75027 752 aa18.83■□□□□ 0.6
LINC01088-205ENST00000509088 ZBTB22O15209 634 aa18.77■□□□□ 0.6
LINC01088-205ENST00000509088 ATF5Q9Y2D1 282 aaPredicted RBP18.62■□□□□ 0.57
LINC01088-205ENST00000509088 POLA2Q14181 598 aa18.5■□□□□ 0.55
LINC01088-205ENST00000509088 ATXN8OSP0DMR3 200 aa18.22■□□□□ 0.51
LINC01088-205ENST00000509088 RBM42Q9BTD8 480 aaKnown RBP18.15■□□□□ 0.5
LINC01088-205ENST00000509088 POTEHQ6S545 545 aa18.06■□□□□ 0.48
LINC01088-205ENST00000509088 ZBTB12Q9Y330 459 aaPredicted RBP18.06■□□□□ 0.48
LINC01088-205ENST00000509088 CSRNP3Q8WYN3 585 aa17.98■□□□□ 0.47
LINC01088-205ENST00000509088 OSCARQ8IYS5 282 aa17.95■□□□□ 0.46
LINC01088-205ENST00000509088 AKT1S1Q96B36 256 aa17.82■□□□□ 0.44
LINC01088-205ENST00000509088 MKRN4PQ13434 485 aaPredicted RBP17.77■□□□□ 0.44
LINC01088-205ENST00000509088 CHRDL2Q6WN34 429 aa17.77■□□□□ 0.44
LINC01088-205ENST00000509088 EHMT2Q96KQ7 1210 aa17.75■□□□□ 0.43
LINC01088-205ENST00000509088 REM2Q8IYK8 340 aaPredicted RBP17.69■□□□□ 0.42
LINC01088-205ENST00000509088 FBLN2P98095 1184 aa17.68■□□□□ 0.42
LINC01088-205ENST00000509088 SPDYE2BA6NHP3 402 aa17.58■□□□□ 0.4
LINC01088-205ENST00000509088 SPDYE6P0CI01 402 aa17.58■□□□□ 0.4
LINC01088-205ENST00000509088 SPDYE2Q495Y8 402 aa17.58■□□□□ 0.4
LINC01088-205ENST00000509088 PITPNM1O00562 1244 aa17.53■□□□□ 0.4
LINC01088-205ENST00000509088 SSUH2Q9Y2M2 353 aa17.44■□□□□ 0.38
LINC01088-205ENST00000509088 PIP4P2Q8N4L2 257 aa17.42■□□□□ 0.38
LINC01088-205ENST00000509088 ZNF692Q9BU19 519 aaPredicted RBP17.37■□□□□ 0.37
LINC01088-205ENST00000509088 FXR2P51116 673 aaKnown RBP eCLIP17.34■□□□□ 0.37
LINC01088-205ENST00000509088 SPDYE1Q8NFV5 336 aaPredicted RBP17.2■□□□□ 0.34
LINC01088-205ENST00000509088 CLEC11AQ9Y240 323 aa17.16■□□□□ 0.34
LINC01088-205ENST00000509088 PABPN1Q86U42 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
LINC01088-205ENST00000509088 PRKAR2AP13861 404 aaKnown RBP17.02■□□□□ 0.32
LINC01088-205ENST00000509088 SP7Q8TDD2 431 aaPredicted RBP17■□□□□ 0.31
LINC01088-205ENST00000509088 HAX1O00165 279 aa16.96■□□□□ 0.31
LINC01088-205ENST00000509088 EVX2Q03828 476 aa16.93■□□□□ 0.3
LINC01088-205ENST00000509088 CHADLQ6NUI6 762 aa16.91■□□□□ 0.3
LINC01088-205ENST00000509088 SPDYE4A6NLX3 237 aa16.89■□□□□ 0.29
LINC01088-205ENST00000509088 PRR29P0C7W0 189 aa16.89■□□□□ 0.29
LINC01088-205ENST00000509088 C19orf67A6NJJ6 358 aa16.78■□□□□ 0.28
LINC01088-205ENST00000509088 FARP1Q9Y4F1 1045 aaPredicted RBP16.64■□□□□ 0.25
LINC01088-205ENST00000509088 PROM2Q8N271 834 aa16.63■□□□□ 0.25
LINC01088-205ENST00000509088 CREBZFQ9NS37 354 aa16.63■□□□□ 0.25
LINC01088-205ENST00000509088 STAG3Q9UJ98 1225 aa16.63■□□□□ 0.25
LINC01088-205ENST00000509088 GABBR2O75899 941 aa16.48■□□□□ 0.23
LINC01088-205ENST00000509088 CD44P16070 742 aaKnown RBP16.48■□□□□ 0.23
LINC01088-205ENST00000509088 MNX1P50219 401 aaPredicted RBP16.42■□□□□ 0.22
LINC01088-205ENST00000509088 ZNF579Q8NAF0 562 aaKnown RBP16.27■□□□□ 0.2
LINC01088-205ENST00000509088 ZRANB1Q9UGI0 708 aa16.26■□□□□ 0.19
LINC01088-205ENST00000509088 POTEIP0CG38 1075 aa16.22■□□□□ 0.19
LINC01088-205ENST00000509088 FKBP8Q14318 412 aa16.21■□□□□ 0.19
LINC01088-205ENST00000509088 NPM1P06748 294 aaKnown RBP eCLIP16.17■□□□□ 0.18
LINC01088-205ENST00000509088 CLCN6P51797 869 aa16.15■□□□□ 0.18
LINC01088-205ENST00000509088 PHF12Q96QT6 1004 aa16.11■□□□□ 0.17
LINC01088-205ENST00000509088 GALR2O43603 387 aaPredicted RBP16.09■□□□□ 0.17
LINC01088-205ENST00000509088 PAK3O75914 559 aaPredicted RBP16.06■□□□□ 0.16
LINC01088-205ENST00000509088 MIER1Q8N108 512 aa16.03■□□□□ 0.16
LINC01088-205ENST00000509088 DCBLD2Q96PD2 775 aa15.96■□□□□ 0.15
LINC01088-205ENST00000509088 TSPYL2Q9H2G4 693 aaPredicted RBP15.96■□□□□ 0.15
LINC01088-205ENST00000509088 CCDC61Q9Y6R9 512 aa15.96■□□□□ 0.15
LINC01088-205ENST00000509088 RASEFQ8IZ41 740 aa15.93■□□□□ 0.14
LINC01088-205ENST00000509088 LHX8Q68G74 356 aa15.92■□□□□ 0.14
LINC01088-205ENST00000509088 PLCD3Q8N3E9 789 aa15.92■□□□□ 0.14
LINC01088-205ENST00000509088 MS4A3Q96HJ5 214 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms