RNA–Protein interactions for RNA: ENST00000515597.1

LINC01088-211, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 1 (best)

Gene LINC01088, Length 664 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-211ENST00000515597 AEBP2Q6ZN18 517 aaPredicted RBP28.04■■■□□ 2.08
LINC01088-211ENST00000515597 CHIC1Q5VXU3 224 aa26.74■■□□□ 1.87
LINC01088-211ENST00000515597 SENP3Q9H4L4 574 aaPredicted RBP23.82■■□□□ 1.4
LINC01088-211ENST00000515597 PHF23Q9BUL5 403 aaPredicted RBP23.56■■□□□ 1.36
LINC01088-211ENST00000515597 FOXD1Q16676 465 aa22.23■■□□□ 1.15
LINC01088-211ENST00000515597 PLPPR3Q6T4P5 718 aa21.42■■□□□ 1.02
LINC01088-211ENST00000515597 PPP6R1Q9UPN7 881 aa20.93■□□□□ 0.94
LINC01088-211ENST00000515597 ADRA2BP18089 450 aa20.88■□□□□ 0.93
LINC01088-211ENST00000515597 PIAS4Q8N2W9 510 aaPredicted RBP20.82■□□□□ 0.92
LINC01088-211ENST00000515597 MSH5O43196 834 aa20.69■□□□□ 0.9
LINC01088-211ENST00000515597 POTEDQ86YR6 584 aa19.96■□□□□ 0.79
LINC01088-211ENST00000515597 MAPK8IP2Q13387 824 aaPredicted RBP19.14■□□□□ 0.65
LINC01088-211ENST00000515597 SCAF1Q9H7N4 1312 aaKnown RBP19.01■□□□□ 0.63
LINC01088-211ENST00000515597 DMRT2Q9Y5R5 561 aa18.93■□□□□ 0.62
LINC01088-211ENST00000515597 PPP4R3CPQ6ZMV5 832 aa18.83■□□□□ 0.6
LINC01088-211ENST00000515597 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
LINC01088-211ENST00000515597 HOXD11P31277 338 aaPredicted RBP18.29■□□□□ 0.52
LINC01088-211ENST00000515597 DCAF8L1A6NGE4 600 aa18.21■□□□□ 0.51
LINC01088-211ENST00000515597 RNF216Q9NWF9 866 aaPredicted RBP18.19■□□□□ 0.5
LINC01088-211ENST00000515597 NCBP3Q53F19 620 aaKnown RBP18.11■□□□□ 0.49
LINC01088-211ENST00000515597 NPM3O75607 178 aaKnown RBP17.9■□□□□ 0.46
LINC01088-211ENST00000515597 KCNA4P22459 653 aa17.73■□□□□ 0.43
LINC01088-211ENST00000515597 CACNB1Q02641 598 aaPredicted RBP17.69■□□□□ 0.42
LINC01088-211ENST00000515597 RNF39Q9H2S5 420 aa17.69■□□□□ 0.42
LINC01088-211ENST00000515597 DNAJC5BQ9UF47 199 aa17.54■□□□□ 0.4
LINC01088-211ENST00000515597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.45■□□□□ 0.38
LINC01088-211ENST00000515597 C1QBPQ07021 282 aaKnown RBP17.4■□□□□ 0.38
LINC01088-211ENST00000515597 U3KPZ7 1027 aaPredicted RBP17.13■□□□□ 0.33
LINC01088-211ENST00000515597 SLC4A2P04920 1241 aa17.07■□□□□ 0.32
LINC01088-211ENST00000515597 SPINK5Q9NQ38 1064 aaPredicted RBP16.85■□□□□ 0.29
LINC01088-211ENST00000515597 CAPN15O75808 1086 aa16.79■□□□□ 0.28
LINC01088-211ENST00000515597 SLC4A1APQ9BWU0 796 aaKnown RBP16.76■□□□□ 0.27
LINC01088-211ENST00000515597 DSG3P32926 999 aa16.63■□□□□ 0.25
LINC01088-211ENST00000515597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.61■□□□□ 0.25
LINC01088-211ENST00000515597 HNRNPUL2Q1KMD3 747 aaKnown RBP16.61■□□□□ 0.25
LINC01088-211ENST00000515597 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
LINC01088-211ENST00000515597 APLP2Q06481 763 aa16.58■□□□□ 0.24
LINC01088-211ENST00000515597 SAMD1Q6SPF0 538 aaPredicted RBP16.55■□□□□ 0.24
LINC01088-211ENST00000515597 MYCNP04198 464 aaPredicted RBP16.53■□□□□ 0.24
LINC01088-211ENST00000515597 ZNF219Q9P2Y4 722 aaPredicted RBP16.5■□□□□ 0.23
LINC01088-211ENST00000515597 FOXD4L1Q9NU39 408 aa16.47■□□□□ 0.23
LINC01088-211ENST00000515597 ABCB7O75027 752 aa16.46■□□□□ 0.23
LINC01088-211ENST00000515597 ZBTB22O15209 634 aa16.33■□□□□ 0.2
LINC01088-211ENST00000515597 ATF5Q9Y2D1 282 aaPredicted RBP16.2■□□□□ 0.18
LINC01088-211ENST00000515597 POLA2Q14181 598 aa16.14■□□□□ 0.17
LINC01088-211ENST00000515597 ATXN8OSP0DMR3 200 aa15.88■□□□□ 0.13
LINC01088-211ENST00000515597 RBM42Q9BTD8 480 aaKnown RBP15.83■□□□□ 0.12
LINC01088-211ENST00000515597 ZBTB12Q9Y330 459 aaPredicted RBP15.77■□□□□ 0.12
LINC01088-211ENST00000515597 CSRNP3Q8WYN3 585 aa15.69■□□□□ 0.1
LINC01088-211ENST00000515597 OSCARQ8IYS5 282 aa15.67■□□□□ 0.1
LINC01088-211ENST00000515597 POTEHQ6S545 545 aa15.66■□□□□ 0.1
LINC01088-211ENST00000515597 EHMT2Q96KQ7 1210 aa15.64■□□□□ 0.09
LINC01088-211ENST00000515597 AKT1S1Q96B36 256 aa15.5■□□□□ 0.07
LINC01088-211ENST00000515597 FBLN2P98095 1184 aa15.49■□□□□ 0.07
LINC01088-211ENST00000515597 CHRDL2Q6WN34 429 aa15.46■□□□□ 0.07
LINC01088-211ENST00000515597 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
LINC01088-211ENST00000515597 REM2Q8IYK8 340 aaPredicted RBP15.39■□□□□ 0.05
LINC01088-211ENST00000515597 SPDYE2BA6NHP3 402 aa15.32■□□□□ 0.04
LINC01088-211ENST00000515597 SPDYE6P0CI01 402 aa15.32■□□□□ 0.04
LINC01088-211ENST00000515597 SPDYE2Q495Y8 402 aa15.32■□□□□ 0.04
LINC01088-211ENST00000515597 PITPNM1O00562 1244 aa15.25■□□□□ 0.03
LINC01088-211ENST00000515597 ZNF692Q9BU19 519 aaPredicted RBP15.19■□□□□ 0.02
LINC01088-211ENST00000515597 SSUH2Q9Y2M2 353 aa15.15■□□□□ 0.02
LINC01088-211ENST00000515597 PIP4P2Q8N4L2 257 aa15.13■□□□□ 0.01
LINC01088-211ENST00000515597 FXR2P51116 673 aaKnown RBP eCLIP15.04■□□□□ -0
LINC01088-211ENST00000515597 CLEC11AQ9Y240 323 aa15.03■□□□□ -0
LINC01088-211ENST00000515597 SPDYE1Q8NFV5 336 aaPredicted RBP15.02■□□□□ -0
LINC01088-211ENST00000515597 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
LINC01088-211ENST00000515597 PRKAR2AP13861 404 aaKnown RBP14.85□□□□□ -0.03
LINC01088-211ENST00000515597 HAX1O00165 279 aa14.82□□□□□ -0.04
LINC01088-211ENST00000515597 SPDYE4A6NLX3 237 aa14.78□□□□□ -0.04
LINC01088-211ENST00000515597 PRR29P0C7W0 189 aa14.77□□□□□ -0.05
LINC01088-211ENST00000515597 CHADLQ6NUI6 762 aa14.76□□□□□ -0.05
LINC01088-211ENST00000515597 SP7Q8TDD2 431 aaPredicted RBP14.76□□□□□ -0.05
LINC01088-211ENST00000515597 EVX2Q03828 476 aa14.68□□□□□ -0.06
LINC01088-211ENST00000515597 C19orf67A6NJJ6 358 aa14.56□□□□□ -0.08
LINC01088-211ENST00000515597 STAG3Q9UJ98 1225 aa14.54□□□□□ -0.08
LINC01088-211ENST00000515597 FARP1Q9Y4F1 1045 aaPredicted RBP14.5□□□□□ -0.09
LINC01088-211ENST00000515597 CREBZFQ9NS37 354 aa14.47□□□□□ -0.09
LINC01088-211ENST00000515597 PROM2Q8N271 834 aa14.42□□□□□ -0.1
LINC01088-211ENST00000515597 CD44P16070 742 aaKnown RBP14.39□□□□□ -0.11
LINC01088-211ENST00000515597 GABBR2O75899 941 aa14.32□□□□□ -0.12
LINC01088-211ENST00000515597 FKBP8Q14318 412 aa14.25□□□□□ -0.13
LINC01088-211ENST00000515597 MNX1P50219 401 aaPredicted RBP14.23□□□□□ -0.13
LINC01088-211ENST00000515597 ZRANB1Q9UGI0 708 aa14.22□□□□□ -0.13
LINC01088-211ENST00000515597 NPM1P06748 294 aaKnown RBP eCLIP14.16□□□□□ -0.14
LINC01088-211ENST00000515597 ZNF579Q8NAF0 562 aaKnown RBP14.16□□□□□ -0.14
LINC01088-211ENST00000515597 PAK3O75914 559 aaPredicted RBP14.1□□□□□ -0.15
LINC01088-211ENST00000515597 PHF12Q96QT6 1004 aa14.08□□□□□ -0.16
LINC01088-211ENST00000515597 MIER1Q8N108 512 aa14.07□□□□□ -0.16
LINC01088-211ENST00000515597 POTEIP0CG38 1075 aa14.04□□□□□ -0.16
LINC01088-211ENST00000515597 CLCN6P51797 869 aa14.04□□□□□ -0.16
LINC01088-211ENST00000515597 GALR2O43603 387 aaPredicted RBP14.01□□□□□ -0.17
LINC01088-211ENST00000515597 PLEKHG5O94827 1062 aa14□□□□□ -0.17
LINC01088-211ENST00000515597 PLCD3Q8N3E9 789 aa13.99□□□□□ -0.17
LINC01088-211ENST00000515597 TSPYL2Q9H2G4 693 aaPredicted RBP13.98□□□□□ -0.17
LINC01088-211ENST00000515597 DCBLD2Q96PD2 775 aa13.96□□□□□ -0.17
LINC01088-211ENST00000515597 RASEFQ8IZ41 740 aa13.9□□□□□ -0.18
LINC01088-211ENST00000515597 CCDC61Q9Y6R9 512 aa13.88□□□□□ -0.19
LINC01088-211ENST00000515597 MS4A3Q96HJ5 214 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms