RNA–Protein interactions for RNA: ENST00000513153.5

LINC01088-210, Transcript of long intergenic non-protein coding RNA 1088, humanhuman

TSL 3

Gene LINC01088, Length 695 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01088-210ENST00000513153 AEBP2Q6ZN18 517 aaPredicted RBP30.45■■■□□ 2.47
LINC01088-210ENST00000513153 CHIC1Q5VXU3 224 aa28.55■■■□□ 2.16
LINC01088-210ENST00000513153 SENP3Q9H4L4 574 aaPredicted RBP26.05■■□□□ 1.76
LINC01088-210ENST00000513153 PHF23Q9BUL5 403 aaPredicted RBP25.67■■□□□ 1.7
LINC01088-210ENST00000513153 FOXD1Q16676 465 aa24.33■■□□□ 1.49
LINC01088-210ENST00000513153 POTEDQ86YR6 584 aa23.04■■□□□ 1.28
LINC01088-210ENST00000513153 MSH5O43196 834 aa22.92■■□□□ 1.26
LINC01088-210ENST00000513153 PIAS4Q8N2W9 510 aaPredicted RBP22.66■■□□□ 1.22
LINC01088-210ENST00000513153 PLPPR3Q6T4P5 718 aa22.65■■□□□ 1.22
LINC01088-210ENST00000513153 PPP6R1Q9UPN7 881 aa22.45■■□□□ 1.18
LINC01088-210ENST00000513153 ADRA2BP18089 450 aa22.37■■□□□ 1.17
LINC01088-210ENST00000513153 MAPK8IP2Q13387 824 aaPredicted RBP20.67■□□□□ 0.9
LINC01088-210ENST00000513153 DMRT2Q9Y5R5 561 aa20.58■□□□□ 0.89
LINC01088-210ENST00000513153 SCAF1Q9H7N4 1312 aaKnown RBP20.48■□□□□ 0.87
LINC01088-210ENST00000513153 CACNB1Q02641 598 aaPredicted RBP19.95■□□□□ 0.78
LINC01088-210ENST00000513153 DCAF8L1A6NGE4 600 aa19.84■□□□□ 0.77
LINC01088-210ENST00000513153 PPP4R3CPQ6ZMV5 832 aa19.81■□□□□ 0.76
LINC01088-210ENST00000513153 HOXD11P31277 338 aaPredicted RBP19.67■□□□□ 0.74
LINC01088-210ENST00000513153 CNKSR2Q8WXI2 1034 aa19.52■□□□□ 0.72
LINC01088-210ENST00000513153 RNF39Q9H2S5 420 aa19.51■□□□□ 0.71
LINC01088-210ENST00000513153 RNF216Q9NWF9 866 aaPredicted RBP19.42■□□□□ 0.7
LINC01088-210ENST00000513153 C1QBPQ07021 282 aaKnown RBP19.21■□□□□ 0.67
LINC01088-210ENST00000513153 DNAJC5BQ9UF47 199 aa19.04■□□□□ 0.64
LINC01088-210ENST00000513153 NCBP3Q53F19 620 aaKnown RBP18.93■□□□□ 0.62
LINC01088-210ENST00000513153 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.8■□□□□ 0.6
LINC01088-210ENST00000513153 NPM3O75607 178 aaKnown RBP18.64■□□□□ 0.57
LINC01088-210ENST00000513153 U3KPZ7 1027 aaPredicted RBP18.32■□□□□ 0.52
LINC01088-210ENST00000513153 CAPN15O75808 1086 aa18.2■□□□□ 0.5
LINC01088-210ENST00000513153 SPINK5Q9NQ38 1064 aaPredicted RBP18.19■□□□□ 0.5
LINC01088-210ENST00000513153 DSG3P32926 999 aa18.15■□□□□ 0.5
LINC01088-210ENST00000513153 POTEHQ6S545 545 aa17.99■□□□□ 0.47
LINC01088-210ENST00000513153 KCNA4P22459 653 aa17.94■□□□□ 0.46
LINC01088-210ENST00000513153 SLC4A2P04920 1241 aa17.89■□□□□ 0.45
LINC01088-210ENST00000513153 TRHP20396 242 aaPredicted RBP17.82■□□□□ 0.44
LINC01088-210ENST00000513153 APLP2Q06481 763 aa17.79■□□□□ 0.44
LINC01088-210ENST00000513153 ABCB7O75027 752 aa17.75■□□□□ 0.43
LINC01088-210ENST00000513153 ZNF219Q9P2Y4 722 aaPredicted RBP17.74■□□□□ 0.43
LINC01088-210ENST00000513153 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.67■□□□□ 0.42
LINC01088-210ENST00000513153 HNRNPUL2Q1KMD3 747 aaKnown RBP17.67■□□□□ 0.42
LINC01088-210ENST00000513153 SAMD1Q6SPF0 538 aaPredicted RBP17.56■□□□□ 0.4
LINC01088-210ENST00000513153 RBM42Q9BTD8 480 aaKnown RBP17.34■□□□□ 0.37
LINC01088-210ENST00000513153 MYCNP04198 464 aaPredicted RBP17.25■□□□□ 0.35
LINC01088-210ENST00000513153 POLA2Q14181 598 aa17.23■□□□□ 0.35
LINC01088-210ENST00000513153 CHRDL2Q6WN34 429 aa17.11■□□□□ 0.33
LINC01088-210ENST00000513153 ATF5Q9Y2D1 282 aaPredicted RBP16.89■□□□□ 0.29
LINC01088-210ENST00000513153 SLC4A1APQ9BWU0 796 aaKnown RBP16.87■□□□□ 0.29
LINC01088-210ENST00000513153 FOXD4L1Q9NU39 408 aa16.87■□□□□ 0.29
LINC01088-210ENST00000513153 AKT1S1Q96B36 256 aa16.85■□□□□ 0.29
LINC01088-210ENST00000513153 ZBTB12Q9Y330 459 aaPredicted RBP16.83■□□□□ 0.28
LINC01088-210ENST00000513153 REM2Q8IYK8 340 aaPredicted RBP16.7■□□□□ 0.26
LINC01088-210ENST00000513153 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
LINC01088-210ENST00000513153 SP7Q8TDD2 431 aaPredicted RBP16.68■□□□□ 0.26
LINC01088-210ENST00000513153 PIP4P2Q8N4L2 257 aa16.62■□□□□ 0.25
LINC01088-210ENST00000513153 PITPNM1O00562 1244 aa16.52■□□□□ 0.24
LINC01088-210ENST00000513153 ZBTB22O15209 634 aa16.47■□□□□ 0.23
LINC01088-210ENST00000513153 HAX1O00165 279 aa16.46■□□□□ 0.23
LINC01088-210ENST00000513153 FXR2P51116 673 aaKnown RBP eCLIP16.44■□□□□ 0.22
LINC01088-210ENST00000513153 ATXN8OSP0DMR3 200 aa16.36■□□□□ 0.21
LINC01088-210ENST00000513153 SPDYE2BA6NHP3 402 aa16.29■□□□□ 0.2
LINC01088-210ENST00000513153 SPDYE6P0CI01 402 aa16.29■□□□□ 0.2
LINC01088-210ENST00000513153 SPDYE2Q495Y8 402 aa16.29■□□□□ 0.2
LINC01088-210ENST00000513153 FBLN2P98095 1184 aa16.27■□□□□ 0.2
LINC01088-210ENST00000513153 EVX2Q03828 476 aa16.19■□□□□ 0.18
LINC01088-210ENST00000513153 CLEC11AQ9Y240 323 aa16.14■□□□□ 0.17
LINC01088-210ENST00000513153 PRKAR2AP13861 404 aaKnown RBP16.11■□□□□ 0.17
LINC01088-210ENST00000513153 SPDYE1Q8NFV5 336 aaPredicted RBP16.1■□□□□ 0.17
LINC01088-210ENST00000513153 MKRN4PQ13434 485 aaPredicted RBP16.08■□□□□ 0.16
LINC01088-210ENST00000513153 ZNF692Q9BU19 519 aaPredicted RBP16.05■□□□□ 0.16
LINC01088-210ENST00000513153 SSUH2Q9Y2M2 353 aa16■□□□□ 0.15
LINC01088-210ENST00000513153 C19orf67A6NJJ6 358 aa15.94■□□□□ 0.14
LINC01088-210ENST00000513153 CHADLQ6NUI6 762 aa15.86■□□□□ 0.13
LINC01088-210ENST00000513153 GABBR2O75899 941 aa15.82■□□□□ 0.12
LINC01088-210ENST00000513153 PRR29P0C7W0 189 aa15.8■□□□□ 0.12
LINC01088-210ENST00000513153 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
LINC01088-210ENST00000513153 LHX8Q68G74 356 aa15.65■□□□□ 0.1
LINC01088-210ENST00000513153 CD44P16070 742 aaKnown RBP15.58■□□□□ 0.08
LINC01088-210ENST00000513153 FARP1Q9Y4F1 1045 aaPredicted RBP15.56■□□□□ 0.08
LINC01088-210ENST00000513153 POTEIP0CG38 1075 aa15.46■□□□□ 0.07
LINC01088-210ENST00000513153 CLCN6P51797 869 aa15.41■□□□□ 0.06
LINC01088-210ENST00000513153 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
LINC01088-210ENST00000513153 DCBLD2Q96PD2 775 aa15.34■□□□□ 0.05
LINC01088-210ENST00000513153 ZRANB1Q9UGI0 708 aa15.3■□□□□ 0.04
LINC01088-210ENST00000513153 ZNF579Q8NAF0 562 aaKnown RBP15.28■□□□□ 0.04
LINC01088-210ENST00000513153 CREBZFQ9NS37 354 aa15.28■□□□□ 0.04
LINC01088-210ENST00000513153 STAG3Q9UJ98 1225 aa15.28■□□□□ 0.04
LINC01088-210ENST00000513153 GALR2O43603 387 aaPredicted RBP15.15■□□□□ 0.02
LINC01088-210ENST00000513153 SPDYE4A6NLX3 237 aa15.14■□□□□ 0.01
LINC01088-210ENST00000513153 PAK3O75914 559 aaPredicted RBP15.1■□□□□ 0.01
LINC01088-210ENST00000513153 EHMT2Q96KQ7 1210 aa15.09■□□□□ 0.01
LINC01088-210ENST00000513153 PHF12Q96QT6 1004 aa15.05■□□□□ -0
LINC01088-210ENST00000513153 NPM1P06748 294 aaKnown RBP eCLIP15.02■□□□□ -0
LINC01088-210ENST00000513153 PLSCR2Q9NRY7 297 aa15.01□□□□□ -0.01
LINC01088-210ENST00000513153 OTUD5Q96G74 571 aa14.97□□□□□ -0.01
LINC01088-210ENST00000513153 POTEB2H3BUK9 544 aa14.95□□□□□ -0.02
LINC01088-210ENST00000513153 MNX1P50219 401 aaPredicted RBP14.95□□□□□ -0.02
LINC01088-210ENST00000513153 PELP1Q8IZL8 1130 aaKnown RBP14.88□□□□□ -0.03
LINC01088-210ENST00000513153 MS4A3Q96HJ5 214 aa14.83□□□□□ -0.04
LINC01088-210ENST00000513153 ASTLQ6HA08 431 aaPredicted RBP14.79□□□□□ -0.04
LINC01088-210ENST00000513153 METRNQ9UJH8 293 aa14.78□□□□□ -0.04
LINC01088-210ENST00000513153 ATMINO43313 823 aaPredicted RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms