Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RBM14-206ENST00000460762 459 ntTSL 222.27■■□□□ 1.163e-6■■■■□ 23.8
SF3B1O75533 RBM14-209ENST00000512283 567 ntTSL 420.15■□□□□ 0.823e-6■■■■□ 23.8
SF3B1O75533 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.49■□□□□ 0.553e-6■■■■□ 23.8
SF3B1O75533 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.173e-6■■■■□ 23.8
SF3B1O75533 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.86□□□□□ -0.033e-6■■■■□ 23.8
SF3B1O75533 RBM14-205ENST00000443702 732 ntTSL 3 BASIC14.32□□□□□ -0.123e-6■■■■□ 23.8
SF3B1O75533 RBM14-203ENST00000409372 876 ntTSL 2 BASIC13.39□□□□□ -0.273e-6■■■■□ 23.8
SF3B1O75533 RBM14-RBM4-204ENST00000511114 523 ntTSL 413.39□□□□□ -0.273e-6■■■■□ 23.8
SF3B1O75533 GOLGA3-205ENST00000537317 298 ntTSL 316.48■□□□□ 0.238e-7■■■■□ 23.8
SF3B1O75533 AVL9-207ENST00000485228 489 ntTSL 521.66■■□□□ 1.061e-6■■■■□ 23.8
SF3B1O75533 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.28■□□□□ 0.845e-8■■■■□ 23.8
SF3B1O75533 PLXNB2-202ENST00000411680 704 ntTSL 218.55■□□□□ 0.561e-6■■■■□ 23.8
SF3B1O75533 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.52■□□□□ 0.565e-8■■■■□ 23.8
SF3B1O75533 ATF7IP2-216ENST00000569900 559 ntTSL 417.99■□□□□ 0.475e-8■■■■□ 23.8
SF3B1O75533 PLXNB2-212ENST00000496720 913 ntTSL 317.84■□□□□ 0.451e-6■■■■□ 23.8
SF3B1O75533 ATF7IP2-207ENST00000561932 538 ntTSL 416.74■□□□□ 0.275e-8■■■■□ 23.8
SF3B1O75533 AVL9-204ENST00000459629 7937 ntTSL 215.75■□□□□ 0.111e-6■■■■□ 23.8
SF3B1O75533 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.15e-8■■■■□ 23.8
SF3B1O75533 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.161e-6■■■■□ 23.8
SF3B1O75533 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.171e-6■■■■□ 23.8
SF3B1O75533 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.25e-8■■■■□ 23.8
SF3B1O75533 ANP32E-210ENST00000629042 3054 ntTSL 5 BASIC13□□□□□ -0.335e-8■■■■□ 23.8
SF3B1O75533 ATF7IP2-210ENST00000562527 625 ntTSL 311□□□□□ -0.655e-8■■■■□ 23.8
SF3B1O75533 ANP32E-208ENST00000583931 3451 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.75e-8■■■■□ 23.8
SF3B1O75533 ATP5A1-209ENST00000589611 995 ntTSL 210.37□□□□□ -0.755e-8■■■■□ 23.8
SF3B1O75533 ATF7IP2-217ENST00000569939 564 ntTSL 49.34□□□□□ -0.915e-8■■■■□ 23.8
SF3B1O75533 UHRF2-213ENST00000492853 2859 ntTSL 1 (best)9.17□□□□□ -0.945e-8■■■■□ 23.8
SF3B1O75533 ATF7IP2-208ENST00000562102 558 ntTSL 46.29□□□□□ -1.45e-8■■■■□ 23.8
SF3B1O75533 ATF7IP2-211ENST00000564797 450 ntTSL 34.96□□□□□ -1.625e-8■■■■□ 23.8
SF3B1O75533 PSMA1-205ENST00000527632 693 ntTSL 24.57□□□□□ -1.685e-8■■■■□ 23.8
SF3B1O75533 PSMA1-207ENST00000528307 1394 ntTSL 54.5□□□□□ -1.695e-8■■■■□ 23.8
SF3B1O75533 UHRF2-212ENST00000485617 3460 ntTSL 1 (best)4.25□□□□□ -1.735e-8■■■■□ 23.8
SF3B1O75533 PSMA1-210ENST00000531023 645 ntTSL 23.1□□□□□ -1.915e-8■■■■□ 23.8
SF3B1O75533 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.01□□□□□ -1.935e-8■■■■□ 23.8
SF3B1O75533 PICALM-205ENST00000526548 738 ntTSL 1 (best)4.33□□□□□ -1.724e-6■■■■□ 23.7
SF3B1O75533 PICALM-207ENST00000526961 802 ntTSL 54.13□□□□□ -1.754e-6■■■■□ 23.7
SF3B1O75533 PICALM-214ENST00000530692 963 ntTSL 53.92□□□□□ -1.784e-6■■■■□ 23.7
SF3B1O75533 PICALM-220ENST00000532603 566 ntTSL 42.93□□□□□ -1.944e-6■■■■□ 23.7
SF3B1O75533 SAFB2-211ENST00000592599 2260 ntTSL 214.47□□□□□ -0.093e-6■■■■□ 23.7
SF3B1O75533 SAFB2-209ENST00000591123 836 ntTSL 512.43□□□□□ -0.423e-6■■■■□ 23.7
SF3B1O75533 NAP1L1-214ENST00000548273 818 ntTSL 314.27□□□□□ -0.124e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC13.62□□□□□ -0.234e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-217ENST00000549988 544 ntTSL 313.31□□□□□ -0.284e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC13.25□□□□□ -0.294e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-205ENST00000542344 1675 ntTSL 2 BASIC12.05□□□□□ -0.484e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-210ENST00000547773 1967 ntTSL 5 BASIC11.97□□□□□ -0.494e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-215ENST00000549479 573 ntTSL 211.64□□□□□ -0.554e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-213ENST00000548044 1339 ntTSL 5 BASIC11.12□□□□□ -0.634e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-209ENST00000547704 760 ntTSL 511□□□□□ -0.654e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-221ENST00000551600 786 ntTSL 511□□□□□ -0.654e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-216ENST00000549596 1838 ntTSL 2 BASIC10.84□□□□□ -0.674e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-203ENST00000431879 2031 ntTSL 2 BASIC10.69□□□□□ -0.74e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-207ENST00000547479 623 ntTSL 510.62□□□□□ -0.714e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-219ENST00000551500 552 ntTSL 1 (best)5.99□□□□□ -1.454e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.7□□□□□ -1.54e-6■■■■□ 23.6
SF3B1O75533 NAP1L1-218ENST00000550934 851 ntTSL 52.88□□□□□ -1.954e-6■■■■□ 23.6
SF3B1O75533 SEPT6-206ENST00000460411 1393 ntTSL 223.42■■□□□ 1.347e-7■■■■□ 23.6
SF3B1O75533 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.797e-7■■■■□ 23.6
SF3B1O75533 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.427e-7■■■■□ 23.6
SF3B1O75533 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.027e-7■■■■□ 23.6
SF3B1O75533 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC14.26□□□□□ -0.137e-7■■■■□ 23.6
SF3B1O75533 SEPT6-205ENST00000394610 4694 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.577e-7■■■■□ 23.6
SF3B1O75533 SEPT6-203ENST00000354416 4652 ntAPPRIS ALT1 TSL 5 BASIC10.17□□□□□ -0.787e-7■■■■□ 23.6
SF3B1O75533 TOP3B-209ENST00000442653 400 ntTSL 39.23□□□□□ -0.931e-12■■■■□ 23.6
SF3B1O75533 GUK1-226ENST00000484953 273 ntTSL 215.06■□□□□ 02e-6■■■■□ 23.6
SF3B1O75533 GUK1-233ENST00000491613 959 ntTSL 314.82□□□□□ -0.042e-6■■■■□ 23.6
SF3B1O75533 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.66■□□□□ 0.12e-6■■■■□ 23.5
SF3B1O75533 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.971e-6■■■■□ 23.5
SF3B1O75533 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC13.55□□□□□ -0.241e-6■■■■□ 23.4
SF3B1O75533 DDX5-218ENST00000581693 2156 ntTSL 512□□□□□ -0.491e-6■■■■□ 23.4
SF3B1O75533 DDX5-203ENST00000540698 2225 ntTSL 511.82□□□□□ -0.521e-6■■■■□ 23.4
SF3B1O75533 DDX5-202ENST00000450599 2077 ntTSL 2 BASIC11.38□□□□□ -0.591e-6■■■■□ 23.4
SF3B1O75533 DDX5-215ENST00000581230 3558 ntTSL 28.53□□□□□ -1.041e-6■■■■□ 23.4
SF3B1O75533 HIVEP1-205ENST00000484210 1602 ntTSL 1 (best) BASIC10.61□□□□□ -0.714e-7■■■■□ 23.4
SF3B1O75533 RPS2-211ENST00000531065 1548 ntTSL 529.72■■■□□ 2.352e-6■■■■□ 23.4
SF3B1O75533 RPS2-209ENST00000529806 993 ntTSL 3 BASIC29■■■□□ 2.232e-6■■■■□ 23.4
SF3B1O75533 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.27■■■□□ 2.122e-6■■■■□ 23.4
SF3B1O75533 RPS2-205ENST00000527109 1030 ntTSL 1 (best)28.27■■■□□ 2.122e-6■■■■□ 23.4
SF3B1O75533 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.12e-6■■■■□ 23.4
SF3B1O75533 RPS2-210ENST00000530225 765 ntTSL 2 BASIC27.35■■□□□ 1.972e-6■■■■□ 23.4
SF3B1O75533 RPS2-208ENST00000527871 1243 ntTSL 1 (best)26.82■■□□□ 1.882e-6■■■■□ 23.4
SF3B1O75533 RPS2-215ENST00000533872 1114 ntTSL 526.57■■□□□ 1.842e-6■■■■□ 23.4
SF3B1O75533 RPS2-213ENST00000533161 1186 ntTSL 1 (best)26.4■■□□□ 1.822e-6■■■■□ 23.4
SF3B1O75533 NPM1-208ENST00000521672 597 ntTSL 58.9□□□□□ -0.981e-6■■■■□ 23.4
SF3B1O75533 NPM1-205ENST00000518587 670 ntTSL 26.89□□□□□ -1.311e-6■■■■□ 23.4
SF3B1O75533 NPM1-211ENST00000523622 247 ntTSL 36.12□□□□□ -1.431e-6■■■■□ 23.4
SF3B1O75533 NPM1-210ENST00000523339 268 ntTSL 24.23□□□□□ -1.731e-6■■■■□ 23.4
SF3B1O75533 CNOT6-206ENST00000510148 456 ntTSL 427.4■■□□□ 1.984e-7■■■■□ 23.4
SF3B1O75533 MED17-218ENST00000639457 1798 ntTSL 525.91■■□□□ 1.744e-7■■■■□ 23.4
SF3B1O75533 MED17-225ENST00000640451 1704 ntTSL 525.66■■□□□ 1.74e-7■■■■□ 23.4
SF3B1O75533 MED17-215ENST00000638518 805 ntTSL 524.78■■□□□ 1.564e-7■■■■□ 23.4
SF3B1O75533 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.43■■□□□ 1.54e-7■■■■□ 23.4
SF3B1O75533 MED17-216ENST00000638790 1885 ntTSL 524.41■■□□□ 1.54e-7■■■■□ 23.4
SF3B1O75533 MED17-209ENST00000533133 2370 ntTSL 521.6■■□□□ 1.054e-7■■■■□ 23.4
SF3B1O75533 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.58■■□□□ 1.054e-7■■■■□ 23.4
SF3B1O75533 MED17-220ENST00000639596 2108 ntTSL 520.76■□□□□ 0.914e-7■■■■□ 23.4
SF3B1O75533 MED17-203ENST00000525026 2621 ntTSL 519.61■□□□□ 0.734e-7■■■■□ 23.4
SF3B1O75533 MED17-229ENST00000640804 2627 ntTSL 519.53■□□□□ 0.724e-7■■■■□ 23.4
SF3B1O75533 MED17-228ENST00000640583 2835 ntTSL 519.01■□□□□ 0.634e-7■■■■□ 23.4
SF3B1O75533 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.544e-7■■■■□ 23.4
Retrieved 100 of 46,956 protein–RNA pairs in 2579 ms