Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC126544.1-201ENST00000580842 1059 ntBASIC22.22■■□□□ 1.15
DDX56Q9NY93 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 PALM-208ENST00000592155 2272 ntTSL 4 BASIC22.21■■□□□ 1.15
DDX56Q9NY93 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX56Q9NY93 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX56Q9NY93 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.21■■□□□ 1.15
DDX56Q9NY93 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DDX56Q9NY93 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.21■■□□□ 1.15
DDX56Q9NY93 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.21■■□□□ 1.15
DDX56Q9NY93 SMUG1P1-201ENST00000590640 811 ntBASIC22.21■■□□□ 1.15
DDX56Q9NY93 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
DDX56Q9NY93 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX56Q9NY93 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.21■■□□□ 1.15
DDX56Q9NY93 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DDX56Q9NY93 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX56Q9NY93 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
DDX56Q9NY93 AC003102.1-202ENST00000563394 1796 ntBASIC22.2■■□□□ 1.14
DDX56Q9NY93 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX56Q9NY93 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX56Q9NY93 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX56Q9NY93 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.2■■□□□ 1.14
DDX56Q9NY93 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX56Q9NY93 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
DDX56Q9NY93 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX56Q9NY93 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX56Q9NY93 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 IGHV3-19-201ENST00000521488 291 ntBASIC22.19■■□□□ 1.14
DDX56Q9NY93 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
DDX56Q9NY93 AP006587.3-201ENST00000525742 1516 ntBASIC22.19■■□□□ 1.14
DDX56Q9NY93 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX56Q9NY93 FEM1AP4-201ENST00000443167 1987 ntBASIC22.19■■□□□ 1.14
DDX56Q9NY93 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
DDX56Q9NY93 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC22.19■■□□□ 1.14
DDX56Q9NY93 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX56Q9NY93 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.18■■□□□ 1.14
DDX56Q9NY93 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
DDX56Q9NY93 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
DDX56Q9NY93 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.18■■□□□ 1.14
DDX56Q9NY93 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
DDX56Q9NY93 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 AC005229.4-201ENST00000610085 2198 ntBASIC22.17■■□□□ 1.14
DDX56Q9NY93 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.17■■□□□ 1.14
DDX56Q9NY93 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.17■■□□□ 1.14
DDX56Q9NY93 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
DDX56Q9NY93 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.17■■□□□ 1.14
DDX56Q9NY93 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
DDX56Q9NY93 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.16■■□□□ 1.14
DDX56Q9NY93 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.16■■□□□ 1.14
DDX56Q9NY93 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 AC096631.2-201ENST00000436136 790 ntBASIC22.16■■□□□ 1.14
DDX56Q9NY93 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC22.16■■□□□ 1.14
DDX56Q9NY93 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
DDX56Q9NY93 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.16■■□□□ 1.14
DDX56Q9NY93 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.16■■□□□ 1.14
DDX56Q9NY93 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
DDX56Q9NY93 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
DDX56Q9NY93 PBX2P1-201ENST00000493219 1291 ntBASIC22.15■■□□□ 1.14
DDX56Q9NY93 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.15■■□□□ 1.14
DDX56Q9NY93 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.15■■□□□ 1.14
DDX56Q9NY93 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.15■■□□□ 1.14
DDX56Q9NY93 AC008764.7-201ENST00000593779 1081 ntBASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms