Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.21■■□□□ 1.31
CDT1Q9H211 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.21■■□□□ 1.31
CDT1Q9H211 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.21■■□□□ 1.31
CDT1Q9H211 EEF1DP3-203ENST00000566025 782 ntBASIC23.21■■□□□ 1.31
CDT1Q9H211 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.21■■□□□ 1.31
CDT1Q9H211 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.21■■□□□ 1.31
CDT1Q9H211 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDT1Q9H211 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.21■■□□□ 1.31
CDT1Q9H211 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.21■■□□□ 1.31
CDT1Q9H211 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CDT1Q9H211 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.21■■□□□ 1.31
CDT1Q9H211 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CDT1Q9H211 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDT1Q9H211 AC133561.1-201ENST00000568600 2415 ntBASIC23.2■■□□□ 1.3
CDT1Q9H211 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.2■■□□□ 1.3
CDT1Q9H211 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.2■■□□□ 1.3
CDT1Q9H211 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
CDT1Q9H211 AC016769.1-201ENST00000409132 1010 ntBASIC23.2■■□□□ 1.3
CDT1Q9H211 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.2■■□□□ 1.3
CDT1Q9H211 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.2■■□□□ 1.3
CDT1Q9H211 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.2■■□□□ 1.3
CDT1Q9H211 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDT1Q9H211 FAM99A-202ENST00000538190 1989 ntBASIC23.2■■□□□ 1.3
CDT1Q9H211 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CDT1Q9H211 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 AP001160.3-201ENST00000601484 763 ntBASIC23.19■■□□□ 1.3
CDT1Q9H211 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.19■■□□□ 1.3
CDT1Q9H211 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDT1Q9H211 AC003102.1-202ENST00000563394 1796 ntBASIC23.19■■□□□ 1.3
CDT1Q9H211 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDT1Q9H211 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CDT1Q9H211 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.18■■□□□ 1.3
CDT1Q9H211 AC138907.5-202ENST00000569484 235 ntBASIC23.18■■□□□ 1.3
CDT1Q9H211 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDT1Q9H211 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.18■■□□□ 1.3
CDT1Q9H211 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CDT1Q9H211 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.18■■□□□ 1.3
CDT1Q9H211 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CDT1Q9H211 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.18■■□□□ 1.3
CDT1Q9H211 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
CDT1Q9H211 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.17■■□□□ 1.3
CDT1Q9H211 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 AC010141.2-201ENST00000452426 721 ntBASIC23.17■■□□□ 1.3
CDT1Q9H211 AC053503.5-201ENST00000601508 636 ntBASIC23.17■■□□□ 1.3
CDT1Q9H211 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDT1Q9H211 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.16■■□□□ 1.3
CDT1Q9H211 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.16■■□□□ 1.3
CDT1Q9H211 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 ECEL1P1-201ENST00000373592 1742 ntBASIC23.16■■□□□ 1.3
CDT1Q9H211 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
CDT1Q9H211 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CDT1Q9H211 AC012676.1-201ENST00000574705 1949 ntBASIC23.16■■□□□ 1.3
CDT1Q9H211 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.15■■□□□ 1.3
CDT1Q9H211 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CDT1Q9H211 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CDT1Q9H211 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CDT1Q9H211 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CDT1Q9H211 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC23.14■■□□□ 1.29
CDT1Q9H211 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.14■■□□□ 1.29
CDT1Q9H211 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.14■■□□□ 1.29
CDT1Q9H211 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CDT1Q9H211 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CDT1Q9H211 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
CDT1Q9H211 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms