Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 MIR4466-201ENST00000606121 54 ntBASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 AC241377.3-202ENST00000626088 1088 ntBASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 AC241585.3-202ENST00000628937 1088 ntBASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 AC245100.8-202ENST00000629247 1058 ntBASIC19.92■□□□□ 0.78
AMBRA1Q9C0C7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.91■□□□□ 0.78
AMBRA1Q9C0C7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 AC006455.2-201ENST00000429931 906 ntBASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
AMBRA1Q9C0C7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
AMBRA1Q9C0C7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.89■□□□□ 0.78
AMBRA1Q9C0C7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 pRNA.6-201ENST00000610482 90 ntBASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 pRNA.5-201ENST00000612139 90 ntBASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 pRNA.11-201ENST00000618423 90 ntBASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 pRNA.13-201ENST00000619112 90 ntBASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
AMBRA1Q9C0C7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 AL136116.3-201ENST00000402907 1138 ntBASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
AMBRA1Q9C0C7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 LINC01006-201ENST00000333319 2292 ntBASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
AMBRA1Q9C0C7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
AMBRA1Q9C0C7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms