Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC28BQ9BUN5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC28BQ9BUN5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC28BQ9BUN5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AL391422.3-201ENST00000603791 2761 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 KRT125P-201ENST00000546827 989 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AL451085.2-201ENST00000605085 799 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AC241377.3-202ENST00000626088 1088 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AC241585.3-202ENST00000628937 1088 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AC245100.8-202ENST00000629247 1058 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AC068587.7-201ENST00000641602 218 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 AC133637.1-201ENST00000624115 1537 ntBASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC28BQ9BUN5 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 Z92544.1-202ENST00000571933 1220 ntBASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 AL049796.1-201ENST00000565336 1766 ntBASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC28BQ9BUN5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 AC010997.5-201ENST00000609182 354 ntBASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC28BQ9BUN5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms