Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LINC00477Q96M19 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LINC00477Q96M19 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LINC00477Q96M19 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC15.95■□□□□ 0.14
LINC00477Q96M19 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LINC00477Q96M19 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
LINC00477Q96M19 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LINC00477Q96M19 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC15.95■□□□□ 0.14
LINC00477Q96M19 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 MFF-203ENST00000349901 1716 ntTSL 2 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.94■□□□□ 0.14
LINC00477Q96M19 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 SF1-220ENST00000626028 704 ntTSL 2 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LINC00477Q96M19 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LINC00477Q96M19 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 AC005229.4-201ENST00000610085 2198 ntBASIC15.93■□□□□ 0.14
LINC00477Q96M19 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
LINC00477Q96M19 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC15.93■□□□□ 0.14
LINC00477Q96M19 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC15.93■□□□□ 0.14
LINC00477Q96M19 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 FEM1AP4-201ENST00000443167 1987 ntBASIC15.93■□□□□ 0.14
LINC00477Q96M19 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.93■□□□□ 0.14
LINC00477Q96M19 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LINC00477Q96M19 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 AC026471.6-201ENST00000622954 1905 ntBASIC15.92■□□□□ 0.14
LINC00477Q96M19 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 RPP21-222ENST00000433076 577 ntTSL 2 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 AC010525.1-201ENST00000585559 441 ntBASIC15.92■□□□□ 0.14
LINC00477Q96M19 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.92■□□□□ 0.14
LINC00477Q96M19 AC011298.3-201ENST00000615796 283 ntBASIC15.92■□□□□ 0.14
LINC00477Q96M19 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LINC00477Q96M19 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
LINC00477Q96M19 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 SERBP1P1-201ENST00000396021 1160 ntBASIC15.91■□□□□ 0.14
LINC00477Q96M19 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 AC136469.2-201ENST00000623944 1028 ntBASIC15.91■□□□□ 0.14
LINC00477Q96M19 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LINC00477Q96M19 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC15.91■□□□□ 0.14
LINC00477Q96M19 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LINC00477Q96M19 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LINC00477Q96M19 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LINC00477Q96M19 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 AP004607.7-201ENST00000527152 1677 ntBASIC15.9■□□□□ 0.14
LINC00477Q96M19 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LINC00477Q96M19 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LINC00477Q96M19 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC15.9■□□□□ 0.14
LINC00477Q96M19 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LINC00477Q96M19 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms