Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC30.04■■■□□ 2.4
USP47Q96K76 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC30.04■■■□□ 2.4
USP47Q96K76 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
USP47Q96K76 MYB-221ENST00000527615 2381 ntTSL 5 BASIC30.04■■■□□ 2.4
USP47Q96K76 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC30.04■■■□□ 2.4
USP47Q96K76 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
USP47Q96K76 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC30.04■■■□□ 2.4
USP47Q96K76 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC30.04■■■□□ 2.4
USP47Q96K76 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
USP47Q96K76 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC30.03■■■□□ 2.4
USP47Q96K76 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC30.03■■■□□ 2.4
USP47Q96K76 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC30.03■■■□□ 2.4
USP47Q96K76 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC30.03■■■□□ 2.4
USP47Q96K76 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC30.03■■■□□ 2.4
USP47Q96K76 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC30.03■■■□□ 2.4
USP47Q96K76 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC30.03■■■□□ 2.4
USP47Q96K76 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC30.03■■■□□ 2.4
USP47Q96K76 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
USP47Q96K76 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
USP47Q96K76 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC30.02■■■□□ 2.4
USP47Q96K76 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
USP47Q96K76 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC30.02■■■□□ 2.4
USP47Q96K76 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC30.02■■■□□ 2.4
USP47Q96K76 FXN-202ENST00000396364 980 ntTSL 5 BASIC30.02■■■□□ 2.4
USP47Q96K76 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
USP47Q96K76 NTF6G-201ENST00000591094 616 ntBASIC30.02■■■□□ 2.4
USP47Q96K76 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
USP47Q96K76 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
USP47Q96K76 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
USP47Q96K76 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC30.01■■■□□ 2.39
USP47Q96K76 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP47Q96K76 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC30.01■■■□□ 2.39
USP47Q96K76 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC30.01■■■□□ 2.39
USP47Q96K76 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP47Q96K76 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.39
USP47Q96K76 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP47Q96K76 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP47Q96K76 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.39
USP47Q96K76 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC30.01■■■□□ 2.39
USP47Q96K76 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
USP47Q96K76 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC30.01■■■□□ 2.39
USP47Q96K76 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
USP47Q96K76 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC30■■■□□ 2.39
USP47Q96K76 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC30■■■□□ 2.39
USP47Q96K76 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC30■■■□□ 2.39
USP47Q96K76 EEF1DP3-203ENST00000566025 782 ntBASIC30■■■□□ 2.39
USP47Q96K76 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC30■■■□□ 2.39
USP47Q96K76 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
USP47Q96K76 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC29.99■■■□□ 2.39
USP47Q96K76 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
USP47Q96K76 GALNS-213ENST00000569433 723 ntTSL 3 BASIC29.99■■■□□ 2.39
USP47Q96K76 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 STK25-234ENST00000535007 2459 ntTSL 2 BASIC29.98■■■□□ 2.39
USP47Q96K76 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC29.98■■■□□ 2.39
USP47Q96K76 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC29.98■■■□□ 2.39
USP47Q96K76 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
USP47Q96K76 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC29.98■■■□□ 2.39
USP47Q96K76 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC29.98■■■□□ 2.39
USP47Q96K76 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC29.98■■■□□ 2.39
USP47Q96K76 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC29.98■■■□□ 2.39
USP47Q96K76 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC29.98■■■□□ 2.39
USP47Q96K76 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
USP47Q96K76 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC29.97■■■□□ 2.39
USP47Q96K76 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC29.97■■■□□ 2.39
USP47Q96K76 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
USP47Q96K76 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC29.96■■■□□ 2.39
USP47Q96K76 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
USP47Q96K76 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC29.96■■■□□ 2.39
USP47Q96K76 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC29.96■■■□□ 2.39
USP47Q96K76 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
USP47Q96K76 AC104187.1-201ENST00000607510 612 ntBASIC29.96■■■□□ 2.39
USP47Q96K76 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC29.96■■■□□ 2.39
USP47Q96K76 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC29.96■■■□□ 2.39
USP47Q96K76 ME2-206ENST00000638410 2289 ntTSL 5 BASIC29.96■■■□□ 2.39
USP47Q96K76 ME2-210ENST00000639255 2262 ntTSL 5 BASIC29.96■■■□□ 2.39
USP47Q96K76 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC29.95■■■□□ 2.39
USP47Q96K76 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
USP47Q96K76 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC29.95■■■□□ 2.39
USP47Q96K76 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC29.95■■■□□ 2.39
USP47Q96K76 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC29.95■■■□□ 2.38
USP47Q96K76 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
USP47Q96K76 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms