Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.31■□□□□ 0.84
VMP1Q96GC9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VMP1Q96GC9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VMP1Q96GC9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 LINC01960-201ENST00000563759 1884 ntBASIC20.3■□□□□ 0.84
VMP1Q96GC9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 AL354811.1-201ENST00000610286 706 ntBASIC20.3■□□□□ 0.84
VMP1Q96GC9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VMP1Q96GC9 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VMP1Q96GC9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.29■□□□□ 0.84
VMP1Q96GC9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.29■□□□□ 0.84
VMP1Q96GC9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.29■□□□□ 0.84
VMP1Q96GC9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 AC012414.1-201ENST00000556676 535 ntBASIC20.29■□□□□ 0.84
VMP1Q96GC9 RARRES2P6-201ENST00000567333 442 ntBASIC20.29■□□□□ 0.84
VMP1Q96GC9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
VMP1Q96GC9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.29■□□□□ 0.84
VMP1Q96GC9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.29■□□□□ 0.84
VMP1Q96GC9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VMP1Q96GC9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
VMP1Q96GC9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VMP1Q96GC9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VMP1Q96GC9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VMP1Q96GC9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VMP1Q96GC9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.28■□□□□ 0.84
VMP1Q96GC9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VMP1Q96GC9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.28■□□□□ 0.84
VMP1Q96GC9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.28■□□□□ 0.84
VMP1Q96GC9 AC105233.4-201ENST00000642045 216 ntBASIC20.28■□□□□ 0.84
VMP1Q96GC9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.28■□□□□ 0.84
VMP1Q96GC9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.27■□□□□ 0.84
VMP1Q96GC9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VMP1Q96GC9 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VMP1Q96GC9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VMP1Q96GC9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VMP1Q96GC9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VMP1Q96GC9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VMP1Q96GC9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VMP1Q96GC9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
VMP1Q96GC9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.27■□□□□ 0.84
VMP1Q96GC9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
VMP1Q96GC9 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VMP1Q96GC9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
VMP1Q96GC9 ESRRAP2-201ENST00000418437 1549 ntBASIC20.27■□□□□ 0.83
VMP1Q96GC9 OXCT2P1-201ENST00000447263 1535 ntBASIC20.27■□□□□ 0.83
VMP1Q96GC9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VMP1Q96GC9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 AC092667.1-201ENST00000434301 2586 ntBASIC20.26■□□□□ 0.83
VMP1Q96GC9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
VMP1Q96GC9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VMP1Q96GC9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VMP1Q96GC9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.26■□□□□ 0.83
VMP1Q96GC9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VMP1Q96GC9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VMP1Q96GC9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.25■□□□□ 0.83
VMP1Q96GC9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VMP1Q96GC9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms