Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 DUX4L29-201ENST00000425409 679 ntBASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN3Q8NCR9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLRN3Q8NCR9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.02■□□□□ 0.31
CLRN3Q8NCR9 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CLRN3Q8NCR9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
CLRN3Q8NCR9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLRN3Q8NCR9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLRN3Q8NCR9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17■□□□□ 0.31
CLRN3Q8NCR9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CLRN3Q8NCR9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CLRN3Q8NCR9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17■□□□□ 0.31
CLRN3Q8NCR9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 AP000974.1-201ENST00000623909 2387 ntBASIC17■□□□□ 0.31
CLRN3Q8NCR9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CLRN3Q8NCR9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 GABARAPL3-202ENST00000624044 1851 ntBASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLRN3Q8NCR9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 MIR219A2-201ENST00000608502 1504 ntBASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.98■□□□□ 0.31
CLRN3Q8NCR9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.97■□□□□ 0.31
CLRN3Q8NCR9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms