Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 PBX2P1-201ENST00000493219 1291 ntBASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.44■■□□□ 1.34
CCDC40Q4G0X9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 AC104564.3-201ENST00000582367 638 ntBASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 AC008764.7-201ENST00000593779 1081 ntBASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CCDC40Q4G0X9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
CCDC40Q4G0X9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.41■■□□□ 1.34
CCDC40Q4G0X9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.41■■□□□ 1.34
CCDC40Q4G0X9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC40Q4G0X9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC40Q4G0X9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.41■■□□□ 1.34
CCDC40Q4G0X9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC40Q4G0X9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 Z98882.1-201ENST00000622160 2253 ntBASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC40Q4G0X9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC40Q4G0X9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC40Q4G0X9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CCDC40Q4G0X9 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC40Q4G0X9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 AC099791.1-201ENST00000416440 715 ntBASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 IGHV3-19-201ENST00000521488 291 ntBASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 AC133561.4-201ENST00000566112 224 ntBASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 AC106739.1-201ENST00000617035 715 ntBASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC40Q4G0X9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC40Q4G0X9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms