Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKDCP78527 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKDCP78527 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
PRKDCP78527 AL355075.4-201ENST00000554988 638 ntBASIC15.72■□□□□ 0.11
PRKDCP78527 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKDCP78527 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC15.72■□□□□ 0.11
PRKDCP78527 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKDCP78527 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
PRKDCP78527 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
PRKDCP78527 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRKDCP78527 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRKDCP78527 RPS2P55-201ENST00000397318 883 ntBASIC15.71■□□□□ 0.11
PRKDCP78527 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.71■□□□□ 0.11
PRKDCP78527 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.71■□□□□ 0.11
PRKDCP78527 MIR4785-201ENST00000585005 73 ntBASIC15.71■□□□□ 0.11
PRKDCP78527 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC15.71■□□□□ 0.11
PRKDCP78527 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.71■□□□□ 0.11
PRKDCP78527 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 AC010980.2-201ENST00000587099 1412 ntBASIC15.71■□□□□ 0.11
PRKDCP78527 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKDCP78527 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC15.71■□□□□ 0.11
PRKDCP78527 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 AC107956.1-201ENST00000494359 873 ntBASIC15.71■□□□□ 0.11
PRKDCP78527 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
PRKDCP78527 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRKDCP78527 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PRKDCP78527 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 SERPINH1P1-201ENST00000419794 1249 ntBASIC15.7■□□□□ 0.1
PRKDCP78527 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.7■□□□□ 0.1
PRKDCP78527 AC092865.7-201ENST00000641832 219 ntBASIC15.7■□□□□ 0.1
PRKDCP78527 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.7■□□□□ 0.1
PRKDCP78527 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC15.7■□□□□ 0.1
PRKDCP78527 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC15.7■□□□□ 0.1
PRKDCP78527 EEF1DP3-203ENST00000566025 782 ntBASIC15.7■□□□□ 0.1
PRKDCP78527 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PRKDCP78527 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.7■□□□□ 0.1
PRKDCP78527 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PRKDCP78527 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 AC145285.6-201ENST00000604632 637 ntBASIC15.69■□□□□ 0.1
PRKDCP78527 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC15.69■□□□□ 0.1
PRKDCP78527 KRT17P1-201ENST00000399211 1546 ntBASIC15.69■□□□□ 0.1
PRKDCP78527 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.69■□□□□ 0.1
PRKDCP78527 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC15.69■□□□□ 0.1
PRKDCP78527 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC15.69■□□□□ 0.1
PRKDCP78527 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PRKDCP78527 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.69■□□□□ 0.1
PRKDCP78527 RN7SL471P-201ENST00000580476 299 ntBASIC15.69■□□□□ 0.1
PRKDCP78527 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC15.69■□□□□ 0.1
PRKDCP78527 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKDCP78527 AL049637.2-201ENST00000641778 930 ntBASIC15.69■□□□□ 0.1
PRKDCP78527 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PRKDCP78527 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PRKDCP78527 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKDCP78527 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.68■□□□□ 0.1
PRKDCP78527 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKDCP78527 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKDCP78527 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 GATS-209ENST00000454084 1030 ntTSL 3 BASIC15.67■□□□□ 0.1
PRKDCP78527 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.67■□□□□ 0.1
PRKDCP78527 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.67■□□□□ 0.1
PRKDCP78527 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC15.67■□□□□ 0.1
PRKDCP78527 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC15.67■□□□□ 0.1
PRKDCP78527 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKDCP78527 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PRKDCP78527 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKDCP78527 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKDCP78527 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKDCP78527 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC15.66■□□□□ 0.1
PRKDCP78527 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.66■□□□□ 0.1
PRKDCP78527 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms