Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL1P09341 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.52■□□□□ 0.24
CXCL1P09341 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL1P09341 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL1P09341 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CXCL1P09341 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CXCL1P09341 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL1P09341 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.52■□□□□ 0.23
CXCL1P09341 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CXCL1P09341 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL1P09341 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.52■□□□□ 0.23
CXCL1P09341 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CXCL1P09341 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL1P09341 GABARAPL3-202ENST00000624044 1851 ntBASIC16.52■□□□□ 0.23
CXCL1P09341 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CXCL1P09341 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL1P09341 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CXCL1P09341 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CXCL1P09341 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CXCL1P09341 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CXCL1P09341 SMG8-203ENST00000578922 2178 ntBASIC16.51■□□□□ 0.23
CXCL1P09341 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL1P09341 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 MIR6765-201ENST00000614092 87 ntBASIC16.51■□□□□ 0.23
CXCL1P09341 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CXCL1P09341 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
CXCL1P09341 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CXCL1P09341 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.51■□□□□ 0.23
CXCL1P09341 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.51■□□□□ 0.23
CXCL1P09341 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.51■□□□□ 0.23
CXCL1P09341 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CXCL1P09341 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
CXCL1P09341 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.5■□□□□ 0.23
CXCL1P09341 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.5■□□□□ 0.23
CXCL1P09341 LONRF2P2-201ENST00000439212 571 ntBASIC16.5■□□□□ 0.23
CXCL1P09341 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CXCL1P09341 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 BX323043.1-201ENST00000641006 1765 ntBASIC16.5■□□□□ 0.23
CXCL1P09341 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CXCL1P09341 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CXCL1P09341 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CXCL1P09341 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CXCL1P09341 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CXCL1P09341 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.49■□□□□ 0.23
CXCL1P09341 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL1P09341 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL1P09341 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.49■□□□□ 0.23
CXCL1P09341 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CXCL1P09341 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CXCL1P09341 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CXCL1P09341 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CXCL1P09341 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 SPCS2P3-201ENST00000500401 656 ntBASIC16.48■□□□□ 0.23
CXCL1P09341 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC16.48■□□□□ 0.23
CXCL1P09341 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.48■□□□□ 0.23
CXCL1P09341 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CXCL1P09341 AC144652.1-201ENST00000609974 1624 ntBASIC16.48■□□□□ 0.23
CXCL1P09341 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
CXCL1P09341 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CXCL1P09341 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms