Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.9■□□□□ 0.94
TNFP01375 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.9■□□□□ 0.94
TNFP01375 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.9■□□□□ 0.94
TNFP01375 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.9■□□□□ 0.94
TNFP01375 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TNFP01375 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.9■□□□□ 0.94
TNFP01375 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TNFP01375 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TNFP01375 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TNFP01375 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TNFP01375 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TNFP01375 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.89■□□□□ 0.93
TNFP01375 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFP01375 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.89■□□□□ 0.93
TNFP01375 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFP01375 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.89■□□□□ 0.93
TNFP01375 DUX4L16-201ENST00000555130 1264 ntBASIC20.89■□□□□ 0.93
TNFP01375 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.89■□□□□ 0.93
TNFP01375 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.89■□□□□ 0.93
TNFP01375 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TNFP01375 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TNFP01375 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TNFP01375 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TNFP01375 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
TNFP01375 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.88■□□□□ 0.93
TNFP01375 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TNFP01375 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 AC007322.1-201ENST00000426983 750 ntBASIC20.88■□□□□ 0.93
TNFP01375 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.88■□□□□ 0.93
TNFP01375 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.88■□□□□ 0.93
TNFP01375 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.88■□□□□ 0.93
TNFP01375 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.88■□□□□ 0.93
TNFP01375 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.88■□□□□ 0.93
TNFP01375 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TNFP01375 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TNFP01375 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.87■□□□□ 0.93
TNFP01375 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.87■□□□□ 0.93
TNFP01375 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.87■□□□□ 0.93
TNFP01375 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.87■□□□□ 0.93
TNFP01375 MIR663A-201ENST00000385250 93 ntBASIC20.87■□□□□ 0.93
TNFP01375 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TNFP01375 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.87■□□□□ 0.93
TNFP01375 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.87■□□□□ 0.93
TNFP01375 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
TNFP01375 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
TNFP01375 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TNFP01375 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.87■□□□□ 0.93
TNFP01375 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.86■□□□□ 0.93
TNFP01375 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.86■□□□□ 0.93
TNFP01375 AC008175.2-201ENST00000612840 297 ntBASIC20.86■□□□□ 0.93
TNFP01375 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.86■□□□□ 0.93
TNFP01375 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TNFP01375 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.86■□□□□ 0.93
TNFP01375 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.86■□□□□ 0.93
TNFP01375 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TNFP01375 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFP01375 AC092053.2-201ENST00000640557 1818 ntBASIC20.85■□□□□ 0.93
TNFP01375 C1orf229-201ENST00000623686 2258 ntBASIC20.85■□□□□ 0.93
TNFP01375 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFP01375 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.85■□□□□ 0.93
TNFP01375 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.85■□□□□ 0.93
TNFP01375 AC127496.7-201ENST00000625110 1798 ntBASIC20.85■□□□□ 0.93
TNFP01375 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.85■□□□□ 0.93
TNFP01375 SLC7A5P1-201ENST00000568957 537 ntBASIC20.85■□□□□ 0.93
TNFP01375 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 AC120498.10-201ENST00000621827 505 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms