Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CPSF4O95639 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.28■□□□□ 0.84
CPSF4O95639 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
CPSF4O95639 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.27■□□□□ 0.84
CPSF4O95639 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.27■□□□□ 0.84
CPSF4O95639 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.27■□□□□ 0.84
CPSF4O95639 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.27■□□□□ 0.84
CPSF4O95639 AC104564.3-201ENST00000582367 638 ntBASIC20.27■□□□□ 0.84
CPSF4O95639 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CPSF4O95639 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CPSF4O95639 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
CPSF4O95639 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CPSF4O95639 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CPSF4O95639 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CPSF4O95639 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4O95639 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.26■□□□□ 0.83
CPSF4O95639 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4O95639 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4O95639 OXCT2P1-201ENST00000447263 1535 ntBASIC20.26■□□□□ 0.83
CPSF4O95639 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.26■□□□□ 0.83
CPSF4O95639 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4O95639 AF106564.1-201ENST00000607058 2553 ntBASIC20.26■□□□□ 0.83
CPSF4O95639 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CPSF4O95639 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.26■□□□□ 0.83
CPSF4O95639 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.25■□□□□ 0.83
CPSF4O95639 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CPSF4O95639 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.25■□□□□ 0.83
CPSF4O95639 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.25■□□□□ 0.83
CPSF4O95639 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.25■□□□□ 0.83
CPSF4O95639 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.25■□□□□ 0.83
CPSF4O95639 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CPSF4O95639 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.25■□□□□ 0.83
CPSF4O95639 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPSF4O95639 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.25■□□□□ 0.83
CPSF4O95639 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.24■□□□□ 0.83
CPSF4O95639 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.24■□□□□ 0.83
CPSF4O95639 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.24■□□□□ 0.83
CPSF4O95639 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.24■□□□□ 0.83
CPSF4O95639 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 DUX4L19-201ENST00000557448 1267 ntBASIC20.24■□□□□ 0.83
CPSF4O95639 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.24■□□□□ 0.83
CPSF4O95639 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CPSF4O95639 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPSF4O95639 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.23■□□□□ 0.83
CPSF4O95639 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CPSF4O95639 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CPSF4O95639 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.23■□□□□ 0.83
CPSF4O95639 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.23■□□□□ 0.83
CPSF4O95639 AL138724.1-201ENST00000606771 1088 ntBASIC20.23■□□□□ 0.83
CPSF4O95639 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.23■□□□□ 0.83
CPSF4O95639 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.23■□□□□ 0.83
CPSF4O95639 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 FEM1AP4-201ENST00000443167 1987 ntBASIC20.23■□□□□ 0.83
CPSF4O95639 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPSF4O95639 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.22■□□□□ 0.83
CPSF4O95639 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.22■□□□□ 0.83
CPSF4O95639 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
CPSF4O95639 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.22■□□□□ 0.83
CPSF4O95639 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
CPSF4O95639 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms