Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX3O95343 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.85■□□□□ 0.93
SIX3O95343 UNC93B3-201ENST00000308076 687 ntBASIC20.85■□□□□ 0.93
SIX3O95343 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX3O95343 MIR4767-201ENST00000582827 78 ntBASIC20.85■□□□□ 0.93
SIX3O95343 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX3O95343 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SIX3O95343 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SIX3O95343 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.84■□□□□ 0.93
SIX3O95343 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.84■□□□□ 0.93
SIX3O95343 AC131212.1-201ENST00000613771 668 ntBASIC20.84■□□□□ 0.93
SIX3O95343 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SIX3O95343 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX3O95343 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX3O95343 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SIX3O95343 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
SIX3O95343 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.83■□□□□ 0.93
SIX3O95343 AC003102.1-202ENST00000563394 1796 ntBASIC20.83■□□□□ 0.93
SIX3O95343 AL024507.2-201ENST00000606070 2574 ntBASIC20.83■□□□□ 0.93
SIX3O95343 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SIX3O95343 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SIX3O95343 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.83■□□□□ 0.93
SIX3O95343 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SIX3O95343 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.83■□□□□ 0.93
SIX3O95343 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SIX3O95343 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.83■□□□□ 0.93
SIX3O95343 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX3O95343 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX3O95343 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX3O95343 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SIX3O95343 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SIX3O95343 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.82■□□□□ 0.92
SIX3O95343 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SIX3O95343 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.82■□□□□ 0.92
SIX3O95343 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.82■□□□□ 0.92
SIX3O95343 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SIX3O95343 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SIX3O95343 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SIX3O95343 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
SIX3O95343 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.81■□□□□ 0.92
SIX3O95343 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.81■□□□□ 0.92
SIX3O95343 AC024257.2-201ENST00000549699 147 ntBASIC20.81■□□□□ 0.92
SIX3O95343 AL034346.1-201ENST00000568244 1277 ntBASIC20.81■□□□□ 0.92
SIX3O95343 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SIX3O95343 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.81■□□□□ 0.92
SIX3O95343 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.81■□□□□ 0.92
SIX3O95343 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.81■□□□□ 0.92
SIX3O95343 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.81■□□□□ 0.92
SIX3O95343 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SIX3O95343 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SIX3O95343 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX3O95343 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.8■□□□□ 0.92
SIX3O95343 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX3O95343 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX3O95343 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SIX3O95343 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX3O95343 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.8■□□□□ 0.92
SIX3O95343 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX3O95343 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SIX3O95343 BX842568.3-201ENST00000418104 571 ntBASIC20.8■□□□□ 0.92
SIX3O95343 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SIX3O95343 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SIX3O95343 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SIX3O95343 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.79■□□□□ 0.92
SIX3O95343 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX3O95343 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.79■□□□□ 0.92
SIX3O95343 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SIX3O95343 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SIX3O95343 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.79■□□□□ 0.92
SIX3O95343 AL136162.1-201ENST00000607711 1078 ntBASIC20.79■□□□□ 0.92
SIX3O95343 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SIX3O95343 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SIX3O95343 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SIX3O95343 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.78■□□□□ 0.92
SIX3O95343 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SIX3O95343 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SIX3O95343 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms