Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CDKL5O76039 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CDKL5O76039 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CDKL5O76039 PKD1P6-201ENST00000343738 4769 ntBASIC24.83■■□□□ 1.57
CDKL5O76039 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.83■■□□□ 1.57
CDKL5O76039 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CDKL5O76039 MIR638-201ENST00000385237 100 ntBASIC24.83■■□□□ 1.57
CDKL5O76039 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.83■■□□□ 1.57
CDKL5O76039 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
CDKL5O76039 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
CDKL5O76039 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC24.83■■□□□ 1.56
CDKL5O76039 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC24.83■■□□□ 1.56
CDKL5O76039 BX005040.4-201ENST00000637145 1518 ntBASIC24.82■■□□□ 1.56
CDKL5O76039 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.82■■□□□ 1.56
CDKL5O76039 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.82■■□□□ 1.56
CDKL5O76039 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
CDKL5O76039 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.82■■□□□ 1.56
CDKL5O76039 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
CDKL5O76039 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.82■■□□□ 1.56
CDKL5O76039 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.82■■□□□ 1.56
CDKL5O76039 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.82■■□□□ 1.56
CDKL5O76039 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDKL5O76039 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CDKL5O76039 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CDKL5O76039 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
CDKL5O76039 AC003102.1-202ENST00000563394 1796 ntBASIC24.81■■□□□ 1.56
CDKL5O76039 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
CDKL5O76039 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.81■■□□□ 1.56
CDKL5O76039 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.81■■□□□ 1.56
CDKL5O76039 AC012414.1-201ENST00000556676 535 ntBASIC24.81■■□□□ 1.56
CDKL5O76039 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CDKL5O76039 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
CDKL5O76039 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
CDKL5O76039 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.81■■□□□ 1.56
CDKL5O76039 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.8■■□□□ 1.56
CDKL5O76039 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.8■■□□□ 1.56
CDKL5O76039 AL354811.1-201ENST00000610286 706 ntBASIC24.8■■□□□ 1.56
CDKL5O76039 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.8■■□□□ 1.56
CDKL5O76039 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
CDKL5O76039 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CDKL5O76039 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC24.79■■□□□ 1.56
CDKL5O76039 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.79■■□□□ 1.56
CDKL5O76039 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.79■■□□□ 1.56
CDKL5O76039 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDKL5O76039 CLDN5-201ENST00000403084 2357 ntBASIC24.79■■□□□ 1.56
CDKL5O76039 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.79■■□□□ 1.56
CDKL5O76039 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CDKL5O76039 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.78■■□□□ 1.56
CDKL5O76039 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.78■■□□□ 1.56
CDKL5O76039 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CDKL5O76039 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CDKL5O76039 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.78■■□□□ 1.56
CDKL5O76039 AL358852.1-201ENST00000623174 1268 ntBASIC24.78■■□□□ 1.56
CDKL5O76039 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CDKL5O76039 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CDKL5O76039 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC24.78■■□□□ 1.56
CDKL5O76039 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.78■■□□□ 1.56
CDKL5O76039 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CDKL5O76039 AC105265.2-201ENST00000467189 838 ntBASIC24.77■■□□□ 1.56
CDKL5O76039 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.77■■□□□ 1.56
CDKL5O76039 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.77■■□□□ 1.56
CDKL5O76039 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC24.77■■□□□ 1.56
CDKL5O76039 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CDKL5O76039 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CDKL5O76039 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.77■■□□□ 1.56
CDKL5O76039 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.77■■□□□ 1.56
CDKL5O76039 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC24.76■■□□□ 1.55
CDKL5O76039 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
CDKL5O76039 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CDKL5O76039 AC005224.4-201ENST00000583262 1652 ntBASIC24.76■■□□□ 1.55
CDKL5O76039 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.76■■□□□ 1.55
CDKL5O76039 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
CDKL5O76039 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
CDKL5O76039 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CDKL5O76039 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.76■■□□□ 1.55
CDKL5O76039 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC24.76■■□□□ 1.55
CDKL5O76039 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CDKL5O76039 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC24.75■■□□□ 1.55
CDKL5O76039 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CDKL5O76039 MFF-203ENST00000349901 1716 ntTSL 2 BASIC24.75■■□□□ 1.55
CDKL5O76039 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
CDKL5O76039 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms