Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SOX1O00570 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
SOX1O00570 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX1O00570 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SOX1O00570 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX1O00570 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC23.06■■□□□ 1.28
SOX1O00570 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC23.06■■□□□ 1.28
SOX1O00570 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.06■■□□□ 1.28
SOX1O00570 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX1O00570 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX1O00570 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX1O00570 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC23.05■■□□□ 1.28
SOX1O00570 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SOX1O00570 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.05■■□□□ 1.28
SOX1O00570 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SOX1O00570 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC23.05■■□□□ 1.28
SOX1O00570 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.05■■□□□ 1.28
SOX1O00570 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.05■■□□□ 1.28
SOX1O00570 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SOX1O00570 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SOX1O00570 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SOX1O00570 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX1O00570 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX1O00570 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX1O00570 LSM12P1-201ENST00000411836 588 ntBASIC23.04■■□□□ 1.28
SOX1O00570 RNF146-204ENST00000476956 884 ntTSL 2 BASIC23.04■■□□□ 1.28
SOX1O00570 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SOX1O00570 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.04■■□□□ 1.28
SOX1O00570 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
SOX1O00570 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX1O00570 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SOX1O00570 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.03■■□□□ 1.28
SOX1O00570 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SOX1O00570 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.03■■□□□ 1.28
SOX1O00570 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC23.03■■□□□ 1.28
SOX1O00570 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX1O00570 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SOX1O00570 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SOX1O00570 HLA-B-256ENST00000639848 1089 ntBASIC23.03■■□□□ 1.28
SOX1O00570 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
SOX1O00570 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC23.03■■□□□ 1.28
SOX1O00570 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.02■■□□□ 1.28
SOX1O00570 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.02■■□□□ 1.28
SOX1O00570 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SOX1O00570 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SOX1O00570 AC069544.1-201ENST00000609399 999 ntBASIC23.02■■□□□ 1.28
SOX1O00570 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SOX1O00570 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.02■■□□□ 1.28
SOX1O00570 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.02■■□□□ 1.28
SOX1O00570 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.02■■□□□ 1.28
SOX1O00570 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX1O00570 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX1O00570 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX1O00570 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC23.01■■□□□ 1.27
SOX1O00570 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX1O00570 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX1O00570 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX1O00570 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX1O00570 DHDH-203ENST00000522614 776 ntTSL 5 BASIC23.01■■□□□ 1.27
SOX1O00570 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
SOX1O00570 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
SOX1O00570 AL049637.2-201ENST00000641778 930 ntBASIC23.01■■□□□ 1.27
SOX1O00570 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.01■■□□□ 1.27
SOX1O00570 AC142086.6-201ENST00000621154 1765 ntBASIC23.01■■□□□ 1.27
SOX1O00570 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SOX1O00570 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SOX1O00570 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23■■□□□ 1.27
SOX1O00570 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23■■□□□ 1.27
SOX1O00570 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
SOX1O00570 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
SOX1O00570 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23■■□□□ 1.27
SOX1O00570 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23■■□□□ 1.27
SOX1O00570 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC23■■□□□ 1.27
SOX1O00570 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23■■□□□ 1.27
SOX1O00570 RMI2-205ENST00000576027 818 ntTSL 2 BASIC23■■□□□ 1.27
SOX1O00570 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23■■□□□ 1.27
SOX1O00570 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
SOX1O00570 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SOX1O00570 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC22.99■■□□□ 1.27
SOX1O00570 AL355075.4-201ENST00000554988 638 ntBASIC22.99■■□□□ 1.27
SOX1O00570 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.99■■□□□ 1.27
SOX1O00570 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SOX1O00570 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SOX1O00570 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.99■■□□□ 1.27
SOX1O00570 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SOX1O00570 KRT17P1-201ENST00000399211 1546 ntBASIC22.98■■□□□ 1.27
SOX1O00570 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.98■■□□□ 1.27
SOX1O00570 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.98■■□□□ 1.27
SOX1O00570 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC22.98■■□□□ 1.27
SOX1O00570 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC22.98■■□□□ 1.27
SOX1O00570 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC22.98■■□□□ 1.27
SOX1O00570 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.98■■□□□ 1.27
SOX1O00570 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
SOX1O00570 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms