Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL6A5A8TX70 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A5A8TX70 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.83■□□□□ 0.29
COL6A5A8TX70 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.29
COL6A5A8TX70 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.83■□□□□ 0.29
COL6A5A8TX70 SHF-206ENST00000560471 2499 ntTSL 5 BASIC16.83■□□□□ 0.29
COL6A5A8TX70 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
COL6A5A8TX70 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A5A8TX70 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.29
COL6A5A8TX70 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A5A8TX70 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL6A5A8TX70 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.83■□□□□ 0.28
COL6A5A8TX70 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 PNMA6B-201ENST00000538162 1200 ntBASIC16.83■□□□□ 0.28
COL6A5A8TX70 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A5A8TX70 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A5A8TX70 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.82■□□□□ 0.28
COL6A5A8TX70 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 SOX15-203ENST00000570788 1093 ntBASIC16.82■□□□□ 0.28
COL6A5A8TX70 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 OXCT2P1-201ENST00000447263 1535 ntBASIC16.82■□□□□ 0.28
COL6A5A8TX70 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A5A8TX70 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
COL6A5A8TX70 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A5A8TX70 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A5A8TX70 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A5A8TX70 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A5A8TX70 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A5A8TX70 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
COL6A5A8TX70 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A5A8TX70 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A5A8TX70 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
COL6A5A8TX70 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A5A8TX70 KRT17P3-201ENST00000420566 1262 ntBASIC16.81■□□□□ 0.28
COL6A5A8TX70 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL6A5A8TX70 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 ST7-205ENST00000393446 2114 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 TPM4P1-201ENST00000436100 807 ntBASIC16.8■□□□□ 0.28
COL6A5A8TX70 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A5A8TX70 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.8■□□□□ 0.28
COL6A5A8TX70 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A5A8TX70 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A5A8TX70 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms