Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV27A0A087WT01 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 AL136116.3-201ENST00000402907 1138 ntBASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV27A0A087WT01 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 AP004607.7-201ENST00000527152 1677 ntBASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 AP005435.1-201ENST00000529293 1178 ntBASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV27A0A087WT01 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV27A0A087WT01 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV27A0A087WT01 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 AL024507.2-201ENST00000606070 2574 ntBASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 AL034346.1-201ENST00000568244 1277 ntBASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV27A0A087WT01 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms