Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 DUSP8P5-201ENST00000422884 1815 ntBASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 AC007322.4-201ENST00000509611 723 ntBASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 AC083880.1-201ENST00000608266 535 ntBASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC40.92■■■■■ 4.14
SHROOM4Q9ULL8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC40.91■■■■■ 4.14
SHROOM4Q9ULL8 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC40.91■■■■■ 4.14
SHROOM4Q9ULL8 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC40.91■■■■■ 4.14
SHROOM4Q9ULL8 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC40.91■■■■■ 4.14
SHROOM4Q9ULL8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 AC013268.1-206ENST00000638368 961 ntBASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 AC112229.1-201ENST00000639295 961 ntBASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 MYC-209ENST00000641252 345 ntBASIC40.9■■■■■ 4.14
SHROOM4Q9ULL8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC40.89■■■■■ 4.14
SHROOM4Q9ULL8 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC40.89■■■■■ 4.14
SHROOM4Q9ULL8 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC40.89■■■■■ 4.14
SHROOM4Q9ULL8 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC40.89■■■■■ 4.14
SHROOM4Q9ULL8 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC40.89■■■■■ 4.14
SHROOM4Q9ULL8 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC40.88■■■■■ 4.14
SHROOM4Q9ULL8 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC40.88■■■■■ 4.14
SHROOM4Q9ULL8 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC40.88■■■■■ 4.13
SHROOM4Q9ULL8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC40.88■■■■■ 4.13
SHROOM4Q9ULL8 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC40.87■■■■■ 4.13
SHROOM4Q9ULL8 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC40.87■■■■■ 4.13
SHROOM4Q9ULL8 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC40.87■■■■■ 4.13
SHROOM4Q9ULL8 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC40.87■■■■■ 4.13
SHROOM4Q9ULL8 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC40.87■■■■■ 4.13
SHROOM4Q9ULL8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 MIPEPP3-201ENST00000412105 444 ntBASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC40.86■■■■■ 4.13
SHROOM4Q9ULL8 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC40.85■■■■■ 4.13
SHROOM4Q9ULL8 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 AC010141.2-201ENST00000452426 721 ntBASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC40.84■■■■■ 4.13
SHROOM4Q9ULL8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 KRT18P20-201ENST00000548986 1279 ntBASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC40.83■■■■■ 4.13
SHROOM4Q9ULL8 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC40.82■■■■■ 4.13
SHROOM4Q9ULL8 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC40.82■■■■■ 4.13
SHROOM4Q9ULL8 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC40.82■■■■■ 4.13
SHROOM4Q9ULL8 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC40.82■■■■■ 4.13
SHROOM4Q9ULL8 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC40.82■■■■■ 4.12
SHROOM4Q9ULL8 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC40.82■■■■■ 4.12
SHROOM4Q9ULL8 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC40.82■■■■■ 4.12
SHROOM4Q9ULL8 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC40.82■■■■■ 4.12
SHROOM4Q9ULL8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 MFF-207ENST00000409565 1548 ntTSL 2 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms