Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TM9SF3Q9HD45 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.39■■□□□ 1.02
TM9SF3Q9HD45 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TM9SF3Q9HD45 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.39■■□□□ 1.02
TM9SF3Q9HD45 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 UBE2DNL-204ENST00000602536 740 ntBASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TM9SF3Q9HD45 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 ANOS2P-203ENST00000472227 1816 ntBASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
TM9SF3Q9HD45 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
TM9SF3Q9HD45 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 DUX4L16-201ENST00000555130 1264 ntBASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 AP001160.3-201ENST00000601484 763 ntBASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 AL050303.2-201ENST00000619798 666 ntBASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 AC231657.2-201ENST00000624556 255 ntBASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TM9SF3Q9HD45 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 ABHD17AP1-201ENST00000358206 933 ntBASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 AL121832.2-201ENST00000610979 668 ntBASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 AC055733.4-201ENST00000638462 1354 ntBASIC21.35■■□□□ 1.01
TM9SF3Q9HD45 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms