Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 RN7SL471P-201ENST00000580476 299 ntBASIC20.26■□□□□ 0.83
CHD8Q9HCK8 MIR4785-201ENST00000585005 73 ntBASIC20.26■□□□□ 0.83
CHD8Q9HCK8 AC069544.1-201ENST00000609399 999 ntBASIC20.26■□□□□ 0.83
CHD8Q9HCK8 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CHD8Q9HCK8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHD8Q9HCK8 AL135905.2-201ENST00000584934 1404 ntBASIC20.25■□□□□ 0.83
CHD8Q9HCK8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 AC138907.5-202ENST00000569484 235 ntBASIC20.24■□□□□ 0.83
CHD8Q9HCK8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 AC068587.7-201ENST00000641602 218 ntBASIC20.24■□□□□ 0.83
CHD8Q9HCK8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD8Q9HCK8 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 RPS2P55-201ENST00000397318 883 ntBASIC20.23■□□□□ 0.83
CHD8Q9HCK8 TPM4P1-201ENST00000436100 807 ntBASIC20.23■□□□□ 0.83
CHD8Q9HCK8 AC107956.1-201ENST00000494359 873 ntBASIC20.23■□□□□ 0.83
CHD8Q9HCK8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 AL590326.2-201ENST00000625139 305 ntBASIC20.23■□□□□ 0.83
CHD8Q9HCK8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.23■□□□□ 0.83
CHD8Q9HCK8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.22■□□□□ 0.83
CHD8Q9HCK8 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 SOX15-203ENST00000570788 1093 ntBASIC20.21■□□□□ 0.83
CHD8Q9HCK8 AP001412.1-201ENST00000608405 714 ntBASIC20.21■□□□□ 0.83
CHD8Q9HCK8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.21■□□□□ 0.83
CHD8Q9HCK8 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD8Q9HCK8 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.83
CHD8Q9HCK8 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 AC010141.3-201ENST00000456659 717 ntBASIC20.2■□□□□ 0.82
CHD8Q9HCK8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHD8Q9HCK8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms