Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.97■□□□□ 0.63
COL12A1Q99715 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.97■□□□□ 0.63
COL12A1Q99715 RPPH1-201ENST00000516869 333 ntBASIC18.97■□□□□ 0.63
COL12A1Q99715 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
COL12A1Q99715 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.97■□□□□ 0.63
COL12A1Q99715 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL12A1Q99715 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.96■□□□□ 0.63
COL12A1Q99715 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 AL512625.2-201ENST00000417533 625 ntBASIC18.96■□□□□ 0.63
COL12A1Q99715 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.96■□□□□ 0.63
COL12A1Q99715 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL12A1Q99715 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.96■□□□□ 0.63
COL12A1Q99715 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL12A1Q99715 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL12A1Q99715 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.95■□□□□ 0.62
COL12A1Q99715 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL12A1Q99715 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL12A1Q99715 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.95■□□□□ 0.62
COL12A1Q99715 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.95■□□□□ 0.62
COL12A1Q99715 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.95■□□□□ 0.62
COL12A1Q99715 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL12A1Q99715 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.94■□□□□ 0.62
COL12A1Q99715 AL359736.2-201ENST00000621992 437 ntBASIC18.94■□□□□ 0.62
COL12A1Q99715 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.94■□□□□ 0.62
COL12A1Q99715 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.94■□□□□ 0.62
COL12A1Q99715 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
COL12A1Q99715 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL12A1Q99715 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.94■□□□□ 0.62
COL12A1Q99715 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.94■□□□□ 0.62
COL12A1Q99715 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
COL12A1Q99715 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL12A1Q99715 AC233263.1-201ENST00000578059 224 ntBASIC18.94■□□□□ 0.62
COL12A1Q99715 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL12A1Q99715 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.94■□□□□ 0.62
COL12A1Q99715 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL12A1Q99715 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL12A1Q99715 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.93■□□□□ 0.62
COL12A1Q99715 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.93■□□□□ 0.62
COL12A1Q99715 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.93■□□□□ 0.62
COL12A1Q99715 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL12A1Q99715 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL12A1Q99715 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.93■□□□□ 0.62
COL12A1Q99715 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.92■□□□□ 0.62
COL12A1Q99715 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.92■□□□□ 0.62
COL12A1Q99715 TSPY15P-201ENST00000457163 923 ntBASIC18.92■□□□□ 0.62
COL12A1Q99715 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.92■□□□□ 0.62
COL12A1Q99715 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 TERF1P5-201ENST00000477545 1207 ntBASIC18.92■□□□□ 0.62
COL12A1Q99715 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
COL12A1Q99715 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.92■□□□□ 0.62
COL12A1Q99715 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 AC009237.3-201ENST00000393279 1427 ntBASIC18.92■□□□□ 0.62
COL12A1Q99715 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.92■□□□□ 0.62
COL12A1Q99715 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL12A1Q99715 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.92■□□□□ 0.62
COL12A1Q99715 AC133561.5-201ENST00000635547 218 ntBASIC18.92■□□□□ 0.62
COL12A1Q99715 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
COL12A1Q99715 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
COL12A1Q99715 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL12A1Q99715 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.91■□□□□ 0.62
COL12A1Q99715 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.91■□□□□ 0.62
COL12A1Q99715 AC016405.3-201ENST00000607710 860 ntBASIC18.91■□□□□ 0.62
COL12A1Q99715 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL12A1Q99715 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.91■□□□□ 0.62
COL12A1Q99715 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.91■□□□□ 0.62
COL12A1Q99715 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL12A1Q99715 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL12A1Q99715 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.91■□□□□ 0.62
COL12A1Q99715 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.91■□□□□ 0.62
COL12A1Q99715 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL12A1Q99715 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.9■□□□□ 0.62
COL12A1Q99715 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.9■□□□□ 0.62
COL12A1Q99715 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL12A1Q99715 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.9■□□□□ 0.62
COL12A1Q99715 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL12A1Q99715 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL12A1Q99715 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.9■□□□□ 0.62
COL12A1Q99715 AC092865.7-201ENST00000641832 219 ntBASIC18.9■□□□□ 0.62
COL12A1Q99715 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL12A1Q99715 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms