Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 OR10C1-204ENST00000622521 1039 ntBASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNRNP40Q96DI7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SNRNP40Q96DI7 LINC01960-201ENST00000563759 1884 ntBASIC19.33■□□□□ 0.69
SNRNP40Q96DI7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SNRNP40Q96DI7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNRNP40Q96DI7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SNRNP40Q96DI7 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNRNP40Q96DI7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
SNRNP40Q96DI7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNRNP40Q96DI7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 AC007322.4-201ENST00000509611 723 ntBASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 AC008694.1-202ENST00000636953 945 ntBASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.32■□□□□ 0.68
SNRNP40Q96DI7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 AC093787.1-201ENST00000450396 207 ntBASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 EEF1DP3-203ENST00000566025 782 ntBASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 AC092118.2-201ENST00000613495 667 ntBASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNRNP40Q96DI7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 AL512625.2-201ENST00000417533 625 ntBASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 AC053503.5-201ENST00000601508 636 ntBASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 AC069236.1-201ENST00000604339 616 ntBASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 AC016405.3-201ENST00000607710 860 ntBASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNRNP40Q96DI7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 OR7E47P-201ENST00000546390 1422 ntBASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SNRNP40Q96DI7 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNRNP40Q96DI7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms