Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 AC010141.3-201ENST00000456659 717 ntBASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 AC068587.7-201ENST00000641602 218 ntBASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLHC1Q8NHS4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLHC1Q8NHS4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLHC1Q8NHS4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 SLC47A1P1-202ENST00000449666 945 ntBASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CLHC1Q8NHS4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLHC1Q8NHS4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 AL138724.1-201ENST00000606771 1088 ntBASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 AC136469.2-201ENST00000623944 1028 ntBASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 OXCT2P1-201ENST00000447263 1535 ntBASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CLHC1Q8NHS4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms