Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 TNXA-203ENST00000507684 2038 ntBASIC17.08■□□□□ 0.32
CLRN3Q8NCR9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 AC020916.1-201ENST00000587762 1774 ntBASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 AC004408.2-201ENST00000623613 2777 ntBASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.07■□□□□ 0.32
CLRN3Q8NCR9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLRN3Q8NCR9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN3Q8NCR9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLRN3Q8NCR9 NEFHP1-201ENST00000412845 2629 ntBASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN3Q8NCR9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms