Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 SRD5A1P1-201ENST00000442297 786 ntBASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
DEPDC4Q8N2C3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 AL139246.5-201ENST00000606645 996 ntBASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 CA15P2-201ENST00000611168 834 ntBASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
DEPDC4Q8N2C3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 Z98882.1-201ENST00000622160 2253 ntBASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 AL512631.2-201ENST00000604634 923 ntBASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 MIR4466-201ENST00000606121 54 ntBASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 AL391422.3-201ENST00000603791 2761 ntBASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.78■□□□□ 0.76
DEPDC4Q8N2C3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
DEPDC4Q8N2C3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
DEPDC4Q8N2C3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
DEPDC4Q8N2C3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
DEPDC4Q8N2C3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 MIR935-201ENST00000401179 91 ntBASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 DUX4L4-201ENST00000566884 1269 ntBASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DEPDC4Q8N2C3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms