Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CNKSR3Q6P9H4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CNKSR3Q6P9H4 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CNKSR3Q6P9H4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CNKSR3Q6P9H4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.27■■□□□ 1.31
CNKSR3Q6P9H4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 AP006587.3-201ENST00000525742 1516 ntBASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CNKSR3Q6P9H4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CNKSR3Q6P9H4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 LINC00526-201ENST00000581067 1875 ntBASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CNKSR3Q6P9H4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 BX276092.2-201ENST00000417668 665 ntBASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 RARRES2P4-201ENST00000514074 484 ntBASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 AC120498.10-201ENST00000621827 505 ntBASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CNKSR3Q6P9H4 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CNKSR3Q6P9H4 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 AC083880.1-201ENST00000608266 535 ntBASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CNKSR3Q6P9H4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 AC097658.1-201ENST00000475555 843 ntBASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 AC008175.2-201ENST00000612840 297 ntBASIC23.2■■□□□ 1.3
CNKSR3Q6P9H4 MYC-209ENST00000641252 345 ntBASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms