Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NKX3-2P78367 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NKX3-2P78367 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.85■■□□□ 1.41
NKX3-2P78367 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NKX3-2P78367 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.84■■□□□ 1.41
NKX3-2P78367 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.84■■□□□ 1.41
NKX3-2P78367 AC008687.6-201ENST00000596318 630 ntBASIC23.84■■□□□ 1.41
NKX3-2P78367 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC23.84■■□□□ 1.41
NKX3-2P78367 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NKX3-2P78367 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NKX3-2P78367 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
NKX3-2P78367 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.83■■□□□ 1.41
NKX3-2P78367 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.83■■□□□ 1.41
NKX3-2P78367 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.83■■□□□ 1.41
NKX3-2P78367 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.83■■□□□ 1.41
NKX3-2P78367 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.83■■□□□ 1.41
NKX3-2P78367 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.83■■□□□ 1.41
NKX3-2P78367 AL162412.1-201ENST00000567129 965 ntBASIC23.83■■□□□ 1.41
NKX3-2P78367 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.83■■□□□ 1.41
NKX3-2P78367 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.83■■□□□ 1.41
NKX3-2P78367 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.83■■□□□ 1.41
NKX3-2P78367 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
NKX3-2P78367 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NKX3-2P78367 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
NKX3-2P78367 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.83■■□□□ 1.4
NKX3-2P78367 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
NKX3-2P78367 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
NKX3-2P78367 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX3-2P78367 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX3-2P78367 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.82■■□□□ 1.4
NKX3-2P78367 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX3-2P78367 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.82■■□□□ 1.4
NKX3-2P78367 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.82■■□□□ 1.4
NKX3-2P78367 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.82■■□□□ 1.4
NKX3-2P78367 MYC-209ENST00000641252 345 ntBASIC23.82■■□□□ 1.4
NKX3-2P78367 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NKX3-2P78367 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX3-2P78367 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.82■■□□□ 1.4
NKX3-2P78367 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NKX3-2P78367 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.82■■□□□ 1.4
NKX3-2P78367 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.81■■□□□ 1.4
NKX3-2P78367 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
NKX3-2P78367 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 AC093787.1-201ENST00000450396 207 ntBASIC23.81■■□□□ 1.4
NKX3-2P78367 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.81■■□□□ 1.4
NKX3-2P78367 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
NKX3-2P78367 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
NKX3-2P78367 AC069236.1-201ENST00000604339 616 ntBASIC23.81■■□□□ 1.4
NKX3-2P78367 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
NKX3-2P78367 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NKX3-2P78367 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.8■■□□□ 1.4
NKX3-2P78367 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.8■■□□□ 1.4
NKX3-2P78367 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.8■■□□□ 1.4
NKX3-2P78367 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX3-2P78367 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
NKX3-2P78367 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX3-2P78367 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.79■■□□□ 1.4
NKX3-2P78367 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX3-2P78367 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX3-2P78367 POU5F1P4-201ENST00000413175 1085 ntBASIC23.79■■□□□ 1.4
NKX3-2P78367 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
NKX3-2P78367 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX3-2P78367 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.79■■□□□ 1.4
NKX3-2P78367 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.79■■□□□ 1.4
NKX3-2P78367 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NKX3-2P78367 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.79■■□□□ 1.4
NKX3-2P78367 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.79■■□□□ 1.4
NKX3-2P78367 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
NKX3-2P78367 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.79■■□□□ 1.4
NKX3-2P78367 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX3-2P78367 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.79■■□□□ 1.4
NKX3-2P78367 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX3-2P78367 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX3-2P78367 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX3-2P78367 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX3-2P78367 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.78■■□□□ 1.4
NKX3-2P78367 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.78■■□□□ 1.4
NKX3-2P78367 AC016405.3-201ENST00000607710 860 ntBASIC23.78■■□□□ 1.4
NKX3-2P78367 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
NKX3-2P78367 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms