Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA3P55318 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
FOXA3P55318 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
FOXA3P55318 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
FOXA3P55318 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
FOXA3P55318 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.01■□□□□ 0.15
FOXA3P55318 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
FOXA3P55318 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
FOXA3P55318 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.01■□□□□ 0.15
FOXA3P55318 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
FOXA3P55318 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
FOXA3P55318 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16■□□□□ 0.15
FOXA3P55318 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16■□□□□ 0.15
FOXA3P55318 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16■□□□□ 0.15
FOXA3P55318 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
FOXA3P55318 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16■□□□□ 0.15
FOXA3P55318 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16■□□□□ 0.15
FOXA3P55318 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
FOXA3P55318 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
FOXA3P55318 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA3P55318 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXA3P55318 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA3P55318 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA3P55318 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXA3P55318 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
FOXA3P55318 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
FOXA3P55318 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXA3P55318 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXA3P55318 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA3P55318 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA3P55318 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 DUX4L4-201ENST00000566884 1269 ntBASIC15.98■□□□□ 0.15
FOXA3P55318 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA3P55318 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
FOXA3P55318 FEM1AP1-201ENST00000431297 1995 ntBASIC15.98■□□□□ 0.15
FOXA3P55318 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA3P55318 REST-206ENST00000612429 1376 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXA3P55318 REST-207ENST00000616975 1370 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXA3P55318 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA3P55318 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
FOXA3P55318 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
FOXA3P55318 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
FOXA3P55318 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA3P55318 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
FOXA3P55318 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA3P55318 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms