Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHMT2P34897 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SHMT2P34897 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHMT2P34897 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHMT2P34897 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 LINC02228-203ENST00000641970 1355 ntBASIC20.93■□□□□ 0.94
SHMT2P34897 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.93■□□□□ 0.94
SHMT2P34897 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHMT2P34897 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.92■□□□□ 0.94
SHMT2P34897 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SHMT2P34897 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SHMT2P34897 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.92■□□□□ 0.94
SHMT2P34897 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.92■□□□□ 0.94
SHMT2P34897 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.92■□□□□ 0.94
SHMT2P34897 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHMT2P34897 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.91■□□□□ 0.94
SHMT2P34897 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.91■□□□□ 0.94
SHMT2P34897 AL034346.1-201ENST00000568244 1277 ntBASIC20.91■□□□□ 0.94
SHMT2P34897 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.91■□□□□ 0.94
SHMT2P34897 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.91■□□□□ 0.94
SHMT2P34897 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SHMT2P34897 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHMT2P34897 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.9■□□□□ 0.94
SHMT2P34897 AC139530.1-201ENST00000575312 1977 ntBASIC20.9■□□□□ 0.94
SHMT2P34897 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.9■□□□□ 0.94
SHMT2P34897 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.9■□□□□ 0.94
SHMT2P34897 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHMT2P34897 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHMT2P34897 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHMT2P34897 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHMT2P34897 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHMT2P34897 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.9■□□□□ 0.94
SHMT2P34897 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.9■□□□□ 0.94
SHMT2P34897 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.9■□□□□ 0.94
SHMT2P34897 MIR5787-201ENST00000611784 55 ntBASIC20.9■□□□□ 0.94
SHMT2P34897 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.9■□□□□ 0.94
SHMT2P34897 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.9■□□□□ 0.94
SHMT2P34897 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.9■□□□□ 0.94
SHMT2P34897 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHMT2P34897 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
SHMT2P34897 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHMT2P34897 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHMT2P34897 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.89■□□□□ 0.93
SHMT2P34897 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SHMT2P34897 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.89■□□□□ 0.93
SHMT2P34897 TPRG1LP1-201ENST00000598702 760 ntBASIC20.89■□□□□ 0.93
SHMT2P34897 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.89■□□□□ 0.93
SHMT2P34897 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHMT2P34897 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHMT2P34897 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
SHMT2P34897 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.88■□□□□ 0.93
SHMT2P34897 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.88■□□□□ 0.93
SHMT2P34897 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SHMT2P34897 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SHMT2P34897 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SHMT2P34897 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SHMT2P34897 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 AC087623.3-201ENST00000607047 1098 ntBASIC20.88■□□□□ 0.93
SHMT2P34897 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SHMT2P34897 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SHMT2P34897 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.88■□□□□ 0.93
SHMT2P34897 AC009237.3-201ENST00000393279 1427 ntBASIC20.87■□□□□ 0.93
SHMT2P34897 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHMT2P34897 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHMT2P34897 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHMT2P34897 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
SHMT2P34897 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.87■□□□□ 0.93
SHMT2P34897 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.87■□□□□ 0.93
SHMT2P34897 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.87■□□□□ 0.93
SHMT2P34897 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
SHMT2P34897 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SHMT2P34897 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SHMT2P34897 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms