Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMS4P0CW20 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMS4P0CW20 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMS4P0CW20 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LIMS4P0CW20 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
LIMS4P0CW20 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
LIMS4P0CW20 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.63
LIMS4P0CW20 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 AL033527.3-201ENST00000566366 1196 ntBASIC19.01■□□□□ 0.63
LIMS4P0CW20 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LIMS4P0CW20 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS4P0CW20 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIMS4P0CW20 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
LIMS4P0CW20 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19■□□□□ 0.63
LIMS4P0CW20 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19■□□□□ 0.63
LIMS4P0CW20 CD72-202ENST00000378430 585 ntTSL 3 BASIC19■□□□□ 0.63
LIMS4P0CW20 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19■□□□□ 0.63
LIMS4P0CW20 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19■□□□□ 0.63
LIMS4P0CW20 AC012354.3-201ENST00000623734 483 ntBASIC19■□□□□ 0.63
LIMS4P0CW20 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
LIMS4P0CW20 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19■□□□□ 0.63
LIMS4P0CW20 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS4P0CW20 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19■□□□□ 0.63
LIMS4P0CW20 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 AL049796.1-201ENST00000565336 1766 ntBASIC18.99■□□□□ 0.63
LIMS4P0CW20 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMS4P0CW20 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LIMS4P0CW20 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIMS4P0CW20 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LIMS4P0CW20 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMS4P0CW20 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS4P0CW20 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LIMS4P0CW20 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS4P0CW20 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMS4P0CW20 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIMS4P0CW20 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS4P0CW20 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS4P0CW20 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS4P0CW20 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIMS4P0CW20 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMS4P0CW20 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS4P0CW20 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms