Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMS3P0CW19 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.02■□□□□ 0.64
LIMS3P0CW19 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMS3P0CW19 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LIMS3P0CW19 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
LIMS3P0CW19 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
LIMS3P0CW19 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.63
LIMS3P0CW19 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 AL033527.3-201ENST00000566366 1196 ntBASIC19.01■□□□□ 0.63
LIMS3P0CW19 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LIMS3P0CW19 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LIMS3P0CW19 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIMS3P0CW19 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
LIMS3P0CW19 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19■□□□□ 0.63
LIMS3P0CW19 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19■□□□□ 0.63
LIMS3P0CW19 CD72-202ENST00000378430 585 ntTSL 3 BASIC19■□□□□ 0.63
LIMS3P0CW19 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19■□□□□ 0.63
LIMS3P0CW19 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19■□□□□ 0.63
LIMS3P0CW19 AC012354.3-201ENST00000623734 483 ntBASIC19■□□□□ 0.63
LIMS3P0CW19 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
LIMS3P0CW19 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19■□□□□ 0.63
LIMS3P0CW19 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIMS3P0CW19 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19■□□□□ 0.63
LIMS3P0CW19 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 AL049796.1-201ENST00000565336 1766 ntBASIC18.99■□□□□ 0.63
LIMS3P0CW19 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMS3P0CW19 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LIMS3P0CW19 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIMS3P0CW19 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LIMS3P0CW19 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.99■□□□□ 0.63
LIMS3P0CW19 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIMS3P0CW19 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LIMS3P0CW19 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIMS3P0CW19 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMS3P0CW19 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIMS3P0CW19 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIMS3P0CW19 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMS3P0CW19 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms