Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 LINC01960-201ENST00000563759 1884 ntBASIC16.05■□□□□ 0.16
HLA-DQA1P01909 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 ME2-206ENST00000638410 2289 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 ME2-210ENST00000639255 2262 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 HYI-213ENST00000583037 1322 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DQA1P01909 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 AL592295.1-201ENST00000400984 884 ntBASIC16.04■□□□□ 0.16
HLA-DQA1P01909 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 OXCT2P1-201ENST00000447263 1535 ntBASIC16.04■□□□□ 0.16
HLA-DQA1P01909 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DQA1P01909 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.03■□□□□ 0.16
HLA-DQA1P01909 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 GFER-205ENST00000569451 517 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 AC133552.2-201ENST00000619106 1032 ntBASIC16.03■□□□□ 0.16
HLA-DQA1P01909 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DQA1P01909 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DQA1P01909 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 AL020996.1-203ENST00000536896 2307 ntBASIC16.02■□□□□ 0.15
HLA-DQA1P01909 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.02■□□□□ 0.15
HLA-DQA1P01909 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQA1P01909 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQA1P01909 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQA1P01909 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQA1P01909 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQA1P01909 GABARAPL3-202ENST00000624044 1851 ntBASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms