Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC27.21■■□□□ 1.95
CACNA1FO60840 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC27.2■■□□□ 1.95
CACNA1FO60840 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC27.2■■□□□ 1.95
CACNA1FO60840 KRT18P20-201ENST00000548986 1279 ntBASIC27.2■■□□□ 1.95
CACNA1FO60840 AC092437.1-201ENST00000624794 1048 ntBASIC27.2■■□□□ 1.95
CACNA1FO60840 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC27.2■■□□□ 1.95
CACNA1FO60840 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.95
CACNA1FO60840 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CACNA1FO60840 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
CACNA1FO60840 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC27.2■■□□□ 1.94
CACNA1FO60840 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CACNA1FO60840 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CACNA1FO60840 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CACNA1FO60840 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CACNA1FO60840 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
CACNA1FO60840 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC27.19■■□□□ 1.94
CACNA1FO60840 AC026471.6-201ENST00000622954 1905 ntBASIC27.19■■□□□ 1.94
CACNA1FO60840 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CACNA1FO60840 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CACNA1FO60840 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 AC137761.2-201ENST00000561729 223 ntBASIC27.18■■□□□ 1.94
CACNA1FO60840 AC145350.3-201ENST00000569033 163 ntBASIC27.18■■□□□ 1.94
CACNA1FO60840 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC27.18■■□□□ 1.94
CACNA1FO60840 WWOX-218ENST00000627394 894 ntTSL 5 BASIC27.18■■□□□ 1.94
CACNA1FO60840 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC27.18■■□□□ 1.94
CACNA1FO60840 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CACNA1FO60840 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 AC010141.2-201ENST00000452426 721 ntBASIC27.17■■□□□ 1.94
CACNA1FO60840 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC27.17■■□□□ 1.94
CACNA1FO60840 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
CACNA1FO60840 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CACNA1FO60840 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC27.17■■□□□ 1.94
CACNA1FO60840 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 AC022517.1-201ENST00000592429 346 ntBASIC27.17■■□□□ 1.94
CACNA1FO60840 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC27.17■■□□□ 1.94
CACNA1FO60840 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
CACNA1FO60840 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CACNA1FO60840 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC27.16■■□□□ 1.94
CACNA1FO60840 AL117328.2-201ENST00000624617 1940 ntBASIC27.16■■□□□ 1.94
CACNA1FO60840 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CACNA1FO60840 AC003102.1-202ENST00000563394 1796 ntBASIC27.16■■□□□ 1.94
CACNA1FO60840 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
CACNA1FO60840 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CACNA1FO60840 AC133561.1-201ENST00000568600 2415 ntBASIC27.15■■□□□ 1.94
CACNA1FO60840 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.15■■□□□ 1.94
CACNA1FO60840 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC27.15■■□□□ 1.94
CACNA1FO60840 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC27.15■■□□□ 1.94
CACNA1FO60840 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
CACNA1FO60840 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CACNA1FO60840 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC27.15■■□□□ 1.94
CACNA1FO60840 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CACNA1FO60840 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CACNA1FO60840 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CACNA1FO60840 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CACNA1FO60840 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC27.15■■□□□ 1.94
CACNA1FO60840 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC27.15■■□□□ 1.94
CACNA1FO60840 TESC-206ENST00000541210 936 ntTSL 3 BASIC27.15■■□□□ 1.94
CACNA1FO60840 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CACNA1FO60840 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CACNA1FO60840 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
CACNA1FO60840 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CACNA1FO60840 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC27.13■■□□□ 1.93
CACNA1FO60840 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC27.13■■□□□ 1.93
CACNA1FO60840 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CACNA1FO60840 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.13■■□□□ 1.93
CACNA1FO60840 UBE2DNL-204ENST00000602536 740 ntBASIC27.13■■□□□ 1.93
CACNA1FO60840 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CACNA1FO60840 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC27.13■■□□□ 1.93
CACNA1FO60840 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC27.13■■□□□ 1.93
CACNA1FO60840 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CACNA1FO60840 AC010542.4-201ENST00000563151 1910 ntBASIC27.13■■□□□ 1.93
CACNA1FO60840 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CACNA1FO60840 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC27.12■■□□□ 1.93
CACNA1FO60840 SERP1-208ENST00000491660 830 ntTSL 2 BASIC27.12■■□□□ 1.93
CACNA1FO60840 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.12■■□□□ 1.93
CACNA1FO60840 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC27.12■■□□□ 1.93
CACNA1FO60840 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms