Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.11■□□□□ 0.97
SNX3O60493 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.11■□□□□ 0.97
SNX3O60493 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.11■□□□□ 0.97
SNX3O60493 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SNX3O60493 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.11■□□□□ 0.97
SNX3O60493 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
SNX3O60493 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SNX3O60493 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.11■□□□□ 0.97
SNX3O60493 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.1■□□□□ 0.97
SNX3O60493 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
SNX3O60493 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.1■□□□□ 0.97
SNX3O60493 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
SNX3O60493 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
SNX3O60493 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.1■□□□□ 0.97
SNX3O60493 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.1■□□□□ 0.97
SNX3O60493 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SNX3O60493 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.1■□□□□ 0.97
SNX3O60493 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SNX3O60493 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.09■□□□□ 0.97
SNX3O60493 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 AC073314.1-201ENST00000568729 2216 ntBASIC21.09■□□□□ 0.97
SNX3O60493 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.09■□□□□ 0.97
SNX3O60493 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.09■□□□□ 0.97
SNX3O60493 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SNX3O60493 THA1P-201ENST00000590384 1145 ntBASIC21.09■□□□□ 0.97
SNX3O60493 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.09■□□□□ 0.97
SNX3O60493 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SNX3O60493 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SNX3O60493 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.09■□□□□ 0.97
SNX3O60493 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.08■□□□□ 0.97
SNX3O60493 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SNX3O60493 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.08■□□□□ 0.97
SNX3O60493 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SNX3O60493 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SNX3O60493 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SNX3O60493 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SNX3O60493 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SNX3O60493 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SNX3O60493 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.08■□□□□ 0.97
SNX3O60493 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SNX3O60493 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
SNX3O60493 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
SNX3O60493 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.08■□□□□ 0.96
SNX3O60493 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.08■□□□□ 0.96
SNX3O60493 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.08■□□□□ 0.96
SNX3O60493 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.08■□□□□ 0.96
SNX3O60493 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX3O60493 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX3O60493 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX3O60493 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.07■□□□□ 0.96
SNX3O60493 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.07■□□□□ 0.96
SNX3O60493 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX3O60493 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX3O60493 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SNX3O60493 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SNX3O60493 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
SNX3O60493 PCDHAC2-203ENST00000615316 3011 ntBASIC21.07■□□□□ 0.96
SNX3O60493 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.06■□□□□ 0.96
SNX3O60493 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX3O60493 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX3O60493 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX3O60493 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
SNX3O60493 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.06■□□□□ 0.96
SNX3O60493 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SNX3O60493 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SNX3O60493 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX3O60493 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX3O60493 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.05■□□□□ 0.96
SNX3O60493 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.05■□□□□ 0.96
SNX3O60493 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SNX3O60493 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SNX3O60493 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms