Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.56■□□□□ 0.88
SLC28A2O43868 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.56■□□□□ 0.88
SLC28A2O43868 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.56■□□□□ 0.88
SLC28A2O43868 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC28A2O43868 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SLC28A2O43868 AC087742.1-201ENST00000575880 1738 ntBASIC20.56■□□□□ 0.88
SLC28A2O43868 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC28A2O43868 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC28A2O43868 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SLC28A2O43868 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
SLC28A2O43868 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SLC28A2O43868 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC28A2O43868 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SLC28A2O43868 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC28A2O43868 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SLC28A2O43868 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC28A2O43868 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 AC093827.2-201ENST00000512654 315 ntBASIC20.54■□□□□ 0.88
SLC28A2O43868 BID-214ENST00000617586 542 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC28A2O43868 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC28A2O43868 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SLC28A2O43868 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.53■□□□□ 0.88
SLC28A2O43868 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
SLC28A2O43868 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC28A2O43868 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.53■□□□□ 0.88
SLC28A2O43868 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC28A2O43868 AC080038.3-201ENST00000623346 1952 ntBASIC20.53■□□□□ 0.88
SLC28A2O43868 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SLC28A2O43868 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SLC28A2O43868 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A2O43868 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A2O43868 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SLC28A2O43868 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A2O43868 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SLC28A2O43868 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A2O43868 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
SLC28A2O43868 CROCCP5-201ENST00000436658 830 ntBASIC20.52■□□□□ 0.88
SLC28A2O43868 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC28A2O43868 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A2O43868 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
SLC28A2O43868 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A2O43868 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC28A2O43868 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC28A2O43868 AC139530.1-201ENST00000575312 1977 ntBASIC20.52■□□□□ 0.87
SLC28A2O43868 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC28A2O43868 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC28A2O43868 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SLC28A2O43868 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.51■□□□□ 0.87
SLC28A2O43868 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A2O43868 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC28A2O43868 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.51■□□□□ 0.87
SLC28A2O43868 NCF1B-203ENST00000435988 1254 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms