Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB3O15347 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGB3O15347 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
HMGB3O15347 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB3O15347 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB3O15347 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HMGB3O15347 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGB3O15347 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB3O15347 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGB3O15347 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB3O15347 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
HMGB3O15347 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HMGB3O15347 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
HMGB3O15347 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
HMGB3O15347 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
HMGB3O15347 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGB3O15347 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB3O15347 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB3O15347 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB3O15347 HES4-202ENST00000428771 1040 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB3O15347 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB3O15347 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB3O15347 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HMGB3O15347 USF2-207ENST00000595068 1612 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB3O15347 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB3O15347 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
HMGB3O15347 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
HMGB3O15347 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
HMGB3O15347 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
HMGB3O15347 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB3O15347 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGB3O15347 AC092667.1-201ENST00000434301 2586 ntBASIC17.19■□□□□ 0.34
HMGB3O15347 AF106564.1-201ENST00000607058 2553 ntBASIC17.19■□□□□ 0.34
HMGB3O15347 PKD1P5-201ENST00000532415 10291 ntBASIC17.19■□□□□ 0.34
HMGB3O15347 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB3O15347 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB3O15347 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB3O15347 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB3O15347 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB3O15347 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB3O15347 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
HMGB3O15347 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGB3O15347 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGB3O15347 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGB3O15347 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
HMGB3O15347 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
HMGB3O15347 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGB3O15347 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
HMGB3O15347 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB3O15347 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
HMGB3O15347 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGB3O15347 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
HMGB3O15347 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB3O15347 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGB3O15347 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB3O15347 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB3O15347 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 GPX1-201ENST00000419349 1106 ntBASIC17.17■□□□□ 0.34
HMGB3O15347 AL592293.1-201ENST00000502889 1188 ntBASIC17.17■□□□□ 0.34
HMGB3O15347 AC011551.1-201ENST00000614101 683 ntBASIC17.17■□□□□ 0.34
HMGB3O15347 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB3O15347 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGB3O15347 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HMGB3O15347 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGB3O15347 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms