Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.19■□□□□ 0.5
SHOXO15266 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHOXO15266 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOXO15266 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.19■□□□□ 0.5
SHOXO15266 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.19■□□□□ 0.5
SHOXO15266 BX664725.1-201ENST00000438252 379 ntBASIC18.19■□□□□ 0.5
SHOXO15266 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.19■□□□□ 0.5
SHOXO15266 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
SHOXO15266 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
SHOXO15266 SNX5-217ENST00000606557 1087 ntBASIC18.19■□□□□ 0.5
SHOXO15266 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOXO15266 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
SHOXO15266 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHOXO15266 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SHOXO15266 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOXO15266 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOXO15266 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.18■□□□□ 0.5
SHOXO15266 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.18■□□□□ 0.5
SHOXO15266 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SHOXO15266 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOXO15266 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SHOXO15266 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.18■□□□□ 0.5
SHOXO15266 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOXO15266 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOXO15266 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.17■□□□□ 0.5
SHOXO15266 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.17■□□□□ 0.5
SHOXO15266 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.17■□□□□ 0.5
SHOXO15266 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.17■□□□□ 0.5
SHOXO15266 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
SHOXO15266 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOXO15266 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.16■□□□□ 0.5
SHOXO15266 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SHOXO15266 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.16■□□□□ 0.5
SHOXO15266 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.16■□□□□ 0.5
SHOXO15266 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
SHOXO15266 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.16■□□□□ 0.5
SHOXO15266 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOXO15266 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.16■□□□□ 0.5
SHOXO15266 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.16■□□□□ 0.5
SHOXO15266 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOXO15266 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHOXO15266 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SHOXO15266 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.15■□□□□ 0.5
SHOXO15266 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOXO15266 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.15■□□□□ 0.5
SHOXO15266 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOXO15266 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOXO15266 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOXO15266 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOXO15266 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHOXO15266 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SHOXO15266 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.14■□□□□ 0.49
SHOXO15266 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.14■□□□□ 0.49
SHOXO15266 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.14■□□□□ 0.49
SHOXO15266 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 AC079630.1-202ENST00000618127 1840 ntBASIC18.14■□□□□ 0.49
SHOXO15266 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.14■□□□□ 0.49
SHOXO15266 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SHOXO15266 FAM99A-202ENST00000538190 1989 ntBASIC18.13■□□□□ 0.49
SHOXO15266 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHOXO15266 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.13■□□□□ 0.49
SHOXO15266 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.13■□□□□ 0.49
SHOXO15266 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms